Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0123
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 31 0.83
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 2.5
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 2.5
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 3.3
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849... 29 3.3
08_01_0220 - 1751367-1752854 29 4.4
04_04_0208 - 23605701-23607149 28 7.7
01_06_0125 + 26711157-26713297,26715026-26715206 28 7.7
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 660 GRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFELVELPSDTLPP* 481
G Q + ++ D T ++F H+ + + V+ P +NE +VELPS + P
Sbjct: 1967 GNAKQTETETIYSSVDDSTSSDFSSVHNLVRSTVVAPCYSSSKNNERIIVELPSLMVRPF 2026
Query: 480 TVV 472
VV
Sbjct: 2027 KVV 2029
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 204 LKGSGSW*EQYQRTVGTIDSRWV 136
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 204 LKGSGSW*EQYQRTVGTIDSRWV 136
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 664 RRQGHPSQYCRSRGHQPGPNRR 599
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>08_02_1249 -
25584175-25584325,25584520-25584625,25584801-25584963,
25585047-25585241,25585286-25585548,25585654-25585774
Length = 332
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 598 RICYQSRRDH-DPCTVPCSFLCWSQ*VRACGVAVRYTAALNGS 473
+ CY + DH P + SFL W+ +R VA +A+NG+
Sbjct: 97 KACYTNCEDHFHPAIMRLSFLSWNSDLRCHLVAAVLDSAINGT 139
>08_01_0220 - 1751367-1752854
Length = 495
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 357 ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLICSDGELPFKAAVYLTATPQA 518
A+++ PS +A+ +L+S + Y FLL+ + P +AAV L A P A
Sbjct: 2 ATHQRRHPSVAAELEGTLLISGDLFPY---FLLVALEAGGPLRAAVLLAAYPVA 52
>04_04_0208 - 23605701-23607149
Length = 482
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 154 GSNSALVLFSPTTTTFQLLPVSMENSTILHTVAF 255
G SA VLF+P TTT +LP + S + V F
Sbjct: 96 GGQSAFVLFNPITTTEIVLPPLIYESRWVSKVVF 129
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 747 TDAGEYYGVDVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAE 595
++ GE GVD I ++ S D + +E GRG + ++ D G E
Sbjct: 109 SEEGEVRGVDFIDLSSSSSDDEEEKEVEAGRGAGSRVPIIKEAPDDAEGDE 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,632,353
Number of Sequences: 37544
Number of extensions: 556369
Number of successful extensions: 1548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -