Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0123
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     43   3e-04
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             41   0.001
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         40   0.002
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     35   0.091
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                     34   0.12 
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      31   1.5  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   30   2.0  
SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)                     29   4.5  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     29   4.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)                   28   7.9  
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +1

Query: 502 RQLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA-- 675
           R L +  L + +  +C+ +Y G   V +    CAG  R+G     N D G P   ++   
Sbjct: 221 RILQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGPLVCEDNGR 277

Query: 676 --LVGIVSFGKSNANDIYPVVLTSISSFTEW 762
             L G VS+GK +    Y  V   ++S+T+W
Sbjct: 278 WYLHGAVSYGKLHCPTTYYTVFARVASYTDW 308


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +1

Query: 508 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----A 675
           L +  + + + E+C+ +Y     + +    CAG  +         D G P   +      
Sbjct: 87  LQQARIPIASHEDCKRKYGSG--IYSYTHLCAGEAKPNAAGACQGDSGGPLVCERNGQWT 144

Query: 676 LVGIVSFGKSNANDIYPVVLTSISSFTEWSTKRS 777
           L G+VSFG  N       V T +S++ +W TKR+
Sbjct: 145 LYGVVSFGAGNCEVTSYTVYTKVSNYLDWITKRA 178


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
 Frame = +1

Query: 439 PGYFC*SARMGNYRSRRQCI*RQLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRA 618
           PG  C  +  G  +       + L + ++ + +++ C  Q    DR+ T+N  CAG+ R 
Sbjct: 343 PGTKCTISGWGALQEGAGSTSKVLMQAKVPLVSRDQCSHQQSYGDRI-TENMLCAGM-RQ 400

Query: 619 GGRDYDNTDLGAPAFFQN-------ALVGIVSFGKSNANDIYPVVLTSISSFTEW 762
           GG D    D G P    N        LVG+ S+GK  A  +   +  ++  +  W
Sbjct: 401 GGVDSCQGDSGGPFVCTNPENPRQWTLVGVTSWGKGCARALKYGIYANVRRYLHW 455


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
 Frame = +1

Query: 430 RNTPGYFC*SARMGNYRSRRQCI*RQLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGL 609
           R  PG  C     G      Q     L +  L + + ENCR +Y     V +    CAG 
Sbjct: 552 RPAPGKRCYITGWGAINGDTQQSPDILQQAMLPIASHENCRRKYGD---VSSTAHLCAGE 608

Query: 610 VRAGGRDYDNTDLGAPAFFQNA----LVGIVSFGKSNANDIYPVVLTSISSFTEW 762
            R+      N D G P   ++     L G VS+G  N    +  V   ++S+T+W
Sbjct: 609 ARSDAAGGCNGDSGGPLVCEDNGSWFLHGAVSYGLRNCPTTHYTVFARVASYTDW 663


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +1

Query: 508 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 675
           L +  L +     CR+QY+  DR       CAG  R G     N D G P   + +    
Sbjct: 636 LQQAMLPIAEHSLCRKQYRV-DRTAHP---CAGEARVGAAGGCNGDSGGPLVCEQSGVWV 691

Query: 676 LVGIVSFGKSNANDIYPVVLTSISSFTEW 762
           L G VS+G       Y  V T +SS+  W
Sbjct: 692 LHGAVSYGARWCPTDYYTVFTRVSSYVAW 720



 Score = 35.9 bits (79), Expect = 0.039
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 523  LIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA----LVGIV 690
            L + + ENCR +Y     V +    CAG  R+      N D G P   ++     L G V
Sbjct: 913  LPIASHENCRRKYGD---VSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGSWFLHGAV 969

Query: 691  SFGKSNANDIYPVVLTSISSFTEW 762
            S+G       +  V   ++S+T+W
Sbjct: 970  SYGMKYCPTTHYTVFARVASYTDW 993


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 469 GNYRSRRQCI*RQLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 648
           G  +  R  +  +LH+  + + + + CR+ +   D +VT N FCAG   +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310

Query: 649 GAPAFFQNAL 678
           G P    N L
Sbjct: 311 GGPFSVDNPL 320



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 317 HPEFSEENYDKDVSIVRVTHAIHF 388
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
 Frame = +1

Query: 505 QLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNALV- 681
           QL    + V +   CR  Y GH   + D   CAG    G  D    D G P   ++  V 
Sbjct: 585 QLRHATIPVLSVSECRANYSGH--TINDKVICAG-YEGGKIDSCKGDSGGPFVCKDPRVT 641

Query: 682 ------GIVSFGKSNANDIYPVVLTSISSFTEW 762
                 G VS+G   A    P + T I  +  W
Sbjct: 642 SRFILHGAVSWGVGCARKGQPGIYTDIKKYLNW 674


>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 907

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 661 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 572
           RQG P +YCRS   Q GP RR  R  Y  +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 682 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 554
           L+ H G R  +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = +2

Query: 107 SQPGPN*SIPTHLESMVPTVRWY----CSHQLPLPFNCYLFPWRILRSCIPSHFAGSSRR 274
           S PGPN   P   E  +  + WY     S   P   N YL+  +  +S  P HF G    
Sbjct: 110 SMPGPNFPTPVKSERFLNLLSWYKPSLFSSYEPAT-NAYLY--KGFKSGFPLHFEGD--- 163

Query: 275 SEPGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGP 394
            E  +   +  A +HPE  +    K++   R+  +    P
Sbjct: 164 LESIQSQILLSAFDHPEIVDAKLFKELEAHRLAGSFGIPP 203


>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 282

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
 Frame = +1

Query: 505 QLHKLELIVTNKENCREQYKGHDRV--------VTDNKFCAGLVRAGGRDYDNTDLGAPA 660
           +L + +L V +   C E++ G   +        VT+   CAG     G++  N D G P 
Sbjct: 173 KLQQADLRVVSNRACSERHMGSKNMRLENGTWRVTETMLCAGDAGKTGKNGCNGDSGGPF 232

Query: 661 FFQN-----ALVGIVSFGKSNANDI-YPVVLTSISSFTEWSTK 771
             +N      L G+VS+G    +   +  V   +S    W  K
Sbjct: 233 VCRNTAGQWVLQGVVSWGDPECSSANHFSVFARVSVLRHWIDK 275


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 508 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 675
           LH+  + + +++ C++ Y      V+    CAG   AGG D    D G P   +      
Sbjct: 252 LHQAAVPLVSRDTCQKAYNDLHYKVSSRMRCAG-YGAGGIDACQGDSGGPLVCKEGDVWY 310

Query: 676 LVGIVSFG 699
           L+G +S+G
Sbjct: 311 LMGAISWG 318


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 529  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 675
            V N   C++ Y+     VT N  CAG  +   RD  N D G    F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368


>SB_47014| Best HMM Match : rve (HMM E-Value=6.8e-21)
          Length = 752

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 502 RQLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAG 621
           RQLHK+E   T     + + K   R +T+ K+C     AG
Sbjct: 59  RQLHKMEPTETVHYTKQNKSKSKPRQITEGKYCGDSHAAG 98


>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 727 RGRCHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICY 587
           R  CH    F+++  LLA F R+  HP  + R   H   P  R++C+
Sbjct: 249 RQMCHPLAPFRQMCYLLAPFRRQMCHPLAHFRQMCHPLAP-FRQMCH 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,052,798
Number of Sequences: 59808
Number of extensions: 646312
Number of successful extensions: 1595
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)