Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0123
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.3  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    30   2.3  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 453
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 376 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 507
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 352  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 447
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 191 PLPFNCYLFPWRILRSCIPSHFAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 364
           PL +  +   +R LR+   SHFA  + RSE   I+++    N   F +EN +++V I+
Sbjct: 307 PLLYFVFTRQFRDLRTMWNSHFASPASRSESYAITFLSGFSN---FDDENRNENVEII 361


>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +3

Query: 111 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRISLDLPVAVSPVK 290
           S V + ++LP+LN  F    GI L  +        F   +    YRR   D+   ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325

Query: 291 YLMFTLLLTIPNSLRRI 341
            +  + L+ IP   + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 130 YSYPS*INGSNSALVLFSPTTTTFQLL 210
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = -3

Query: 646 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRACGVAVRYTAALNGSS 470
           +++C    +   P    ICY S+RD    T  C    C+        V  +  +++N  +
Sbjct: 382 TEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEA 441

Query: 469 PSEQINKNTLGYY---DTLLDNSTLL 401
           P E+     LGYY   D  L N  LL
Sbjct: 442 PEEEKRLGKLGYYTYCDENLCNGDLL 467


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 658 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 554
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 658 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 554
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 221  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 42
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 41   SY 36
             Y
Sbjct: 964  DY 965


>AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical
           protein F16G10.14 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 242 IPSHFAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 364
           IPS  A       PGEI+    +V+ PE SEE    +V+++
Sbjct: 31  IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,427
Number of Sequences: 27780
Number of extensions: 459771
Number of successful extensions: 1158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)