Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0123
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.52 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.52 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    30   1.6  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    30   1.6  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    30   1.6  
At5g25170.1 68418.m02984 expressed protein                             28   6.4  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    28   6.4  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   6.4  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 448 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 344
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 448 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 344
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 204 LKGSGSW*EQYQRTVGTIDSRWV 136
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 204 LKGSGSW*EQYQRTVGTIDSRWV 136
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 204 LKGSGSW*EQYQRTVGTIDSRWV 136
           +KG   W  +YQR  GTID  W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 591 QILRRFGPGWWPRLRQY*LGCPCLLP 668
           Q+ RR  P W  RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 566 PLYCSLQFSLLVTMSSSLWSCRQ 498
           P Y  L FS+LVT  +SLWS  Q
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQ 234


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 637 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 747
           N  +G  AF  NA   +  FG   +N IYP  +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,509,091
Number of Sequences: 28952
Number of extensions: 422606
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)