Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0120
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    29   1.00 
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   3.0  
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    27   4.0  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   5.3  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   5.3  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   9.3  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +3

Query: 276 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 455
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S   W  ++ R     A
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133

Query: 456 QYVEVIHTDGSGVNK 500
            + ++I  D + + K
Sbjct: 134 YFRKMIQIDEANITK 148


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 231 NGSDGCDRVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGK 377
           N  D     G  +A  L    L +  V +VG++LGA V     R LE K
Sbjct: 544 NSLDRAKATGQLLADMLCYRSLGVRPVTLVGYSLGARVIYYCLRELEKK 592


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 497 QKRLGVAIGHIDFFVNGRLVQPGCTNNLCSHNRAY 601
           QK +   +G  + F + +  +  C N  C +NRAY
Sbjct: 46  QKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 80


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 7   EAQRNSITLTEDHFPTGNDTAAP 75
           E + N I  TE+HFP   +  AP
Sbjct: 375 ENETNQIPTTEEHFPATTEEVAP 397


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 454 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 365
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 216 FINIFNGSDGCDRVGSSIATFLK--NLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 389
           F+NIF G   CD +   + + +   NL +P+    + G N GA    +    L  ++   
Sbjct: 344 FVNIFGGIVRCDVIAKGLISVVSALNLNIPI-ICRLQGTNQGAAKEVINNSGL--RIFSF 400

Query: 390 TGLDPSAR 413
             LD +A+
Sbjct: 401 DDLDEAAK 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,250
Number of Sequences: 5004
Number of extensions: 70681
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)