Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0120
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0035 - 31201115-31203646                                         30   2.4  
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    29   4.2  
10_07_0062 - 12499872-12501350                                         29   4.2  

>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +1

Query: 4   HEAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 180
           H  + + + + +DH+   N T A F+ ++D +V++H  S  AT   NP++++  + T GD
Sbjct: 118 HWIRLHFLPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 267 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 386
           IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 416 IAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>10_07_0062 - 12499872-12501350
          Length = 492

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 246 CDRVGSSIATFLKNLKLPLNKVHIVGFNLGAH 341
           CDR G+ +A+F  + +LP+N +H +  NL  H
Sbjct: 456 CDRKGNVLASFQFDGQLPMNCLHRLKENLVVH 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,986,342
Number of Sequences: 37544
Number of extensions: 460950
Number of successful extensions: 1157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)