Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0120
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      58   1e-08
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            56   4e-08
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  49   5e-06
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  36   0.037
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           29   5.6  
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)              29   5.6  
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      28   9.9  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.9  
SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
 Frame = +3

Query: 309 VHIVGFNLGAHVAGVTGRNLEGK---VARITGLDPSARDW---ENNVLRLGTNDAQYVEV 470
           VH++GF+ GAHVAG  GR ++ +   + RIT LDP+A  W    +  +RL T+DA +V+V
Sbjct: 191 VHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDV 249

Query: 471 IHT 479
           IHT
Sbjct: 250 IHT 252



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
 Frame = +2

Query: 518 IGHIDFFVNGRLVQPGCTN--------NLCSHNRAYEVFAATI-THGKHYGNQCSTEAEI 670
           IGH DF+ NG   QPGC N          C H RA  +F  ++ T    Y   C +E + 
Sbjct: 262 IGHADFYPNGGKKQPGCDNFFRGFSSYLFCGHKRAPALFTTSLYTKTPLYSYPCRSEDDF 321

Query: 671 TANNC 685
            + NC
Sbjct: 322 NSGNC 326



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
 Frame = +1

Query: 76  FNNNSDIVVIIHGHSG-TATTTINPIV-------KDAFLTSGDYNVIVVDWSSFSLSTYS 231
           FN +   V+IIHG +G T  T+I   V       K+  L  GD+NVI+VDW   +   ++
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDWMRGAWFPFT 160

Query: 232 TAV 240
            AV
Sbjct: 161 RAV 163


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
 Frame = +3

Query: 255 VGSSIATFLKN-LKLPLNK----VHIVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSA 410
           VG+ +A F+K  L L  ++     H +GF+LGAH++G  G+ L+  G+ + RITGLDP+ 
Sbjct: 150 VGAQVAAFMKTILSLSGSREGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPAT 209

Query: 411 RDWENNV--LRLGTNDAQYVEVIHT 479
             ++     +RL   DAQ+V+VIHT
Sbjct: 210 LMFKGEAPDVRLDRLDAQFVDVIHT 234


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 29/62 (46%), Positives = 45/62 (72%), Gaps = 5/62 (8%)
 Frame = +3

Query: 312 HIVGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIH 476
           ++VGF+LGAH++G  GR +     K+ RITGLDP++  + N +V +RL  +DA +V+V+H
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMH 749

Query: 477 TD 482
           TD
Sbjct: 750 TD 751



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
 Frame = +2

Query: 521 GHIDFFVNGRLVQPGCTNNL--------CSHNRAYEVFAATIT 625
           GHIDF+ NG   QPGC + L        C H RA E +A ++T
Sbjct: 762 GHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAPEYYAESVT 804


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +3

Query: 219 INIFNGSDGCDRV-GSSIATFLKNLK----LPLNKVHIVGFNLGAHVAGVTGRNLEGKVA 383
           +N+++ + G  RV G+ +A  +  ++      L +VH++G +LGAHVAG  G  L GKV 
Sbjct: 68  LNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVG 127

Query: 384 RIT 392
           RIT
Sbjct: 128 RIT 130



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 58  NDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSS 210
           N TA  F  +  +V+IIHG   +   +   +++D  L     NVI VDW S
Sbjct: 15  NSTA--FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQS 63


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
 Frame = +2

Query: 521 GHIDFFVNGRLVQPGC-------TNNL-CSHNRAYEVFAATIT 625
           GHIDF+ NG   QPGC       +N L C H RA++ F  +IT
Sbjct: 43  GHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAHDYFTESIT 85


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 67  AAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDW 204
           A+ ++      VI HG++ + +T+    ++ A L   D NV++ DW
Sbjct: 95  ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDW 140


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +3

Query: 315 IVGFNLGAHVAGVTG---RNLEG-KVARITG 395
           ++GF+LG HVAG  G   +N  G K+ RI+G
Sbjct: 21  VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 267 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 407
           + +FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 166


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 530  DFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEA 664
            D++   ++   G T+  C     YE      T GK YGN+C   A
Sbjct: 1278 DYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRA 1322


>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 151 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAV 240
           +K+  L  GD+NVI+VDW   +   ++ AV
Sbjct: 19  MKNELLWEGDFNVIIVDWMRGAWFPFTRAV 48


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 524 HID-FFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEAEITANN-CRG 691
           HID   +NG +V PG    +      Y    AT+T G  Y      EAE T    CRG
Sbjct: 33  HIDQSSINGSVVPPGALVTILQKGVQYVEAEATVTEGVQY-----VEAEATVTEVCRG 85


>SB_52296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 VIIQFINIFNGSDGCDRVGSSIATFLKNLKL 296
           +I+Q+IN +NG+  C+     IA  L   KL
Sbjct: 35  IILQYINYYNGTIDCETRAEVIANTLNRYKL 65


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 276 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 407
           FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 1   FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44


>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 231 NGSDGCDRVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSA 410
           +G   C   G+++ T + +   P  +V  V FN   ++ G T  +L   V  +   +P+A
Sbjct: 373 SGRVQCYNPGNNVWTTVASCLTPRCQVGAVAFNSHLYIIGGTTEHLSQPVNLVERYNPAA 432

Query: 411 RDW 419
             W
Sbjct: 433 DSW 435


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 768 VPMPVFTRNIPDPCFTSLAVPISTINPRQLFAV 670
           VP P+     P PC+   A P +T  PR  +A+
Sbjct: 163 VPNPLLQPQCPTPCYCLSAQPPATALPRDKWAI 195


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 106 IHGHSGTATTTINPIVKDAFLTSGDYNV 189
           + G   T TTT N ++K A L +GDY V
Sbjct: 58  VTGPRNTITTTKNALIKAASLKAGDYFV 85


>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 189 YRCG-LVIIQFINIFNGSDGCDRVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRN 365
           Y+ G L+ IQ I  F G D    +     +++ N+K+P  +   + F  G       GRN
Sbjct: 80  YKDGKLLAIQNIKKFLGEDSIQELIDFCLSYMSNIKIPKKRGTFIEFRHGLINVSPIGRN 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,867,040
Number of Sequences: 59808
Number of extensions: 556408
Number of successful extensions: 1496
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)