Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0120
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    31   0.66 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    30   1.5  
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    30   1.5  
At5g40380.1 68418.m04898 protein kinase family protein contains ...    29   2.6  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   4.6  
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    28   6.1  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    28   8.1  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   8.1  
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    28   8.1  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    28   8.1  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    28   8.1  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 261 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 395
           S IA +LKN KL +N + +    L   +A +    + GK+ +  G
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 261 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 386
           S IA +LKN KL +N + +    L   +A +    + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 261 SSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 386
           S IA +LKN KL +N + +    L   +A +    + GK+ +
Sbjct: 420 SDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461


>At5g40380.1 68418.m04898 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 591

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 31  LTEDHFPTGNDTAAPFNNNSDIVVIIHG-----HSGTATTTINPIVK 156
           LTE  +P  + T+ PF   S +   + G     HS  +TTT N +VK
Sbjct: 528 LTERDYPIPSPTSPPFLRVSSLTTDLEGSSTISHSTNSTTTFNTMVK 574


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 142 NPIVKDAFLTSGDYNVIVVDWSSFSL 219
           NP + DAF+ +GDY+ +VV    F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +3

Query: 207 IIQFINIFNGSDGCDRVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVA 383
           II+ IN+ N +    R  +  A  L+N     N    V  N     AG TG NL GK+A
Sbjct: 520 IIREINLSNATSS--RTAAVAAPHLRNYTGLRNNFQPVQLNPQPPAAGDTGNNLVGKLA 576


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 102 NNTRSQWHCYDDDQPYC*RRIFNKWR---L*RYRC 197
           NNTRS+  C+  D+  C  ++  KW+      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 NNTRSQWHCYDDDQPYC*RRIFNKWR 179
           NNTRS+  C+  D+  C  ++  KW+
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 557 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 667
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 557 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 667
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 557 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 667
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,234
Number of Sequences: 28952
Number of extensions: 371473
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)