Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0119
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q638B1 Cluster: Group-specific protein; n=3; Bacillus c...    36   1.4  
UniRef50_Q8QS36 Cluster: DNA packaging protein UL52; n=3; Cytome...    34   4.2  
UniRef50_A4XKF0 Cluster: Beta-lactamase domain protein precursor...    33   9.6  

>UniRef50_Q638B1 Cluster: Group-specific protein; n=3; Bacillus
           cereus group|Rep: Group-specific protein - Bacillus
           cereus (strain ZK / E33L)
          Length = 235

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/62 (30%), Positives = 36/62 (58%)
 Frame = -2

Query: 565 FLFIVVTSRFLLVRYHRNGRDAKRLLKYSVYNIKSPNRISANK*TR*RK*IRALCHKAIR 386
           ++ I++ + F+ +R +++ R+ KRLL+  + N K P+ +        +K I AL H +IR
Sbjct: 113 YITIIIITLFIFLRIYKSRRNKKRLLQDKIENKKKPSEMVQPSIK--KKKINALPHNSIR 170

Query: 385 TE 380
            E
Sbjct: 171 AE 172


>UniRef50_Q8QS36 Cluster: DNA packaging protein UL52; n=3;
           Cytomegalovirus|Rep: DNA packaging protein UL52 -
           Pongine herpesvirus 4 (Chimpanzee cytomegalovirus)
          Length = 640

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -2

Query: 679 KCTKYTSIKFSLRQNDRTEYLLTYLLMFYFCNMGTGRKFLFIVVTSRFL-LVRYHRNGRD 503
           +C     I   LRQ+    +LL Y L+ + CN         ++V S F+ L+R H     
Sbjct: 204 RCNLCAIISICLRQDAEQTWLLDYSLLCFKCNYAPRTALSTLIVMSEFIHLLRRHFPDLH 263

Query: 502 AKRLLKYSVYNI 467
           A  L ++ V  +
Sbjct: 264 ADELFRHHVLTV 275


>UniRef50_A4XKF0 Cluster: Beta-lactamase domain protein precursor;
           n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Beta-lactamase domain protein precursor -
           Caldicellulosiruptor saccharolyticus (strain ATCC 43494
           / DSM 8903)
          Length = 293

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -2

Query: 649 SLRQNDRTEYLLTYLLMFYFCNMGTGRKFLFIVVTSRFLLVRYHRNGRDAKRLLKYSVYN 470
           S  QN+  E+L   +   +F ++G G   L     +RF+LV    N  + + L  +++ N
Sbjct: 29  SFWQNNLKEFLAKDVCTLFFLDVGQGDSILIKSPENRFILVDSGPNTAEERILKIFNILN 88

Query: 469 IKSPNRISA 443
           IK+ + I A
Sbjct: 89  IKTFDMIIA 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,226,880
Number of Sequences: 1657284
Number of extensions: 11681437
Number of successful extensions: 23189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23179
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)