Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0119
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337     28   6.7  

>08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337
          Length = 263

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 344 QSIN---DCDFFKFFLCSYC-FVTQSPYLFSS 427
           QSIN   +C F    LC +  F+T SP+LFSS
Sbjct: 159 QSINLTPNCKFALVLLCMHHQFITNSPFLFSS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,408
Number of Sequences: 37544
Number of extensions: 271660
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)