Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0119
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                  28   6.8  

>SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = -2

Query: 676 CTKYTSIKFSLRQNDRTEYLLTYLLMFYFCNMGTGRKFLFIVVTSRFLLVRYHRNGRDAK 497
           C++ ++I  +L +    +  L+   +F+ C +  G  F+FI  +SR +L+         K
Sbjct: 222 CSEQSAIDDNLAKKKIAKMCLSVTAVFFLCYIPYGIYFVFIAASSREVLIANQYKFEVIK 281

Query: 496 RLLKY 482
           R L++
Sbjct: 282 RALEF 286


>SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 331

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -2

Query: 673 TKYTSIKFSLRQNDRTEYLLTYLLMFYFCNMGTGRKFLFIVVTSRFLLVRYHRNGRDAKR 494
           ++ ++I  +L +    +  L+   +F+ C +  G  F+FI  +SR +L+         KR
Sbjct: 223 SEQSAIDDNLAKKKLAKMCLSVTAVFFLCYISYGIYFVFIAASSREVLIANQYKFEVIKR 282

Query: 493 LLKY 482
            L++
Sbjct: 283 ALEF 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,702,656
Number of Sequences: 59808
Number of extensions: 361356
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)