Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0117
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.027
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.027
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   5.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   7.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 0.027
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 234 KGLRKSDSGCGNDGSRDDHWLGSNGS 157
           K +R  ++G GNDG++ D  LGS GS
Sbjct: 637 KCIRYMEAGDGNDGNQSDDNLGSCGS 662


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 0.027
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 234 KGLRKSDSGCGNDGSRDDHWLGSNGS 157
           K +R  ++G GNDG++ D  LGS GS
Sbjct: 529 KCIRYMEAGDGNDGNQSDDNLGSCGS 554


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 227 SGRVTAGAGMMGVATITGLGATG 159
           SG+ T  AGM+G   I  L   G
Sbjct: 287 SGKYTGEAGMLGYNEIVELQKEG 309


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 186 DDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNG 49
           ++ W  +NG+N +N  R  +   + N+  S   G  + N     NG
Sbjct: 373 NNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSKNSGNG 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,517
Number of Sequences: 336
Number of extensions: 948
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)