Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0117
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   1.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   1.6  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   3.8  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   5.0  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   6.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    24   6.7  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    24   8.8  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    24   8.8  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 231 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFR 58
           G+R+  ++ CG    R +   GSN S N+SN+        DN++   ND    N+N+   
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547

Query: 57  DNGID 43
            N  D
Sbjct: 548 TNTDD 552


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 231 GLRKS-DSGCGNDGSRDDHWLGSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFR 58
           G+R+  ++ CG    R +   GSN S N+SN+        DN++   ND    N+N+   
Sbjct: 490 GIRRHLEAMCGATVERKEG--GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNN 547

Query: 57  DNGID 43
            N  D
Sbjct: 548 TNTDD 552


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 183 DHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDTGSGYNRGRASLV 4
           D +L  +G    +  RL   A  N   L     F +D +GF+ NG+   S Y      +V
Sbjct: 349 DRFLAPSGIMAPSETRLVLTATTNTELLEEPIDFWSDVYGFKMNGMKDAS-YKGVSVQVV 407

Query: 3   P 1
           P
Sbjct: 408 P 408


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 138 RLGDGAIDN-NHGLSNDFGFVND 73
           R+ + AID+ N G+S  FG++ND
Sbjct: 408 RIDNVAIDHLNRGVSGAFGWIND 430


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 162 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRD 55
           GSNV +++  GD + D N  ++++   + DN G  D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 219 SDSGCGNDGSRDDHWLGSNGSNVSNLDR--LGDGAIDNNHGLSNDFGFVNDNHGFRDNGI 46
           S++   N  + ++  + S  S++S +    LG    +NN+  SN   + N+N G  +   
Sbjct: 527 SNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQH 586

Query: 45  DTGSGYNRGRAS 10
              S   +G AS
Sbjct: 587 QQSSSSLQGLAS 598


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 168 SNGSNVSNLDRLGDGAIDN--NHGLSNDFGFVNDNHGFRDNGIDTGSG 31
           SN  N +N      G+ +N  N+G SN++G    ++ +  NG     G
Sbjct: 45  SNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYG 92


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 204 GNDGSRDDHWLGSNGSNVS 148
           G + S+DD WLG  G  V+
Sbjct: 265 GKEKSKDDGWLGLVGKGVT 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,015,618
Number of Sequences: 5004
Number of extensions: 15151
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)