Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0117
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51940.1 68416.m05697 expressed protein 32 0.14
At3g18810.1 68416.m02389 protein kinase family protein contains ... 31 0.18
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 31 0.24
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 31 0.24
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 31 0.32
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 30 0.43
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ... 29 1.3
At3g57780.1 68416.m06436 expressed protein 28 2.3
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052... 27 3.0
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains... 27 4.0
At2g11005.1 68415.m01177 glycine-rich protein 27 4.0
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde... 27 5.3
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 26 7.0
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 26 7.0
At5g06930.1 68418.m00783 expressed protein 26 9.2
At2g04063.1 68415.m00388 glycine-rich protein 26 9.2
At1g68550.2 68414.m07832 AP2 domain-containing transcription fac... 26 9.2
At1g68550.1 68414.m07831 AP2 domain-containing transcription fac... 26 9.2
At1g13940.1 68414.m01637 expressed protein 26 9.2
>At3g51940.1 68416.m05697 expressed protein
Length = 453
Score = 31.9 bits (69), Expect = 0.14
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = -1
Query: 285 SARERSWWTCHIDRYSVKGLRKSDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNH 106
+A++ +W C + + +G G G +RD LG+ G + G
Sbjct: 270 TAKDTTWGGCSGEGWEDRGWNNDSWGSGGWDNRD---LGNQGMEMKEWRGKGYSRDFREP 326
Query: 105 GLSNDF--GFVNDNHGFRDNGIDTGSGYNRGRAS 10
N + GFV DN FR++G++ G G+ R S
Sbjct: 327 KGCNPWKGGFVPDNVAFRESGVNAG-GWQTCRGS 359
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = -1
Query: 249 DRYSVKGLRKSDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSN--DFGFVN 76
D S + +++ GN+G+ ++ +N N +N + G+ +NN+G +N + N
Sbjct: 60 DSQSPPSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGN 119
Query: 75 DNHGFRDNGIDT-GSGYNRGRAS 10
DN+G +NG + + N G S
Sbjct: 120 DNNGNNNNGNNNDNNNQNNGGGS 142
Score = 29.5 bits (63), Expect = 0.75
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 231 GLRKSDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDN 52
G +D+ N+G+ ++ +NG+N N + + +NN+G N+ N N+ +N
Sbjct: 78 GNNNNDNNNNNNGNNNND--NNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNN 135
Query: 51 GIDTGSGYNR 22
+ G NR
Sbjct: 136 QNNGGGSNNR 145
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 204 GNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDTG 37
GND DD NG++ N + +++ N S + G N++H +NG G
Sbjct: 198 GNDEENDDENTEENGNDEENEKEDEENSMEENGNESEESG--NEDHSMEENGSGVG 251
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 111 NHGLSNDFGFVNDNHGFRDNGIDTGSGYNR 22
N G ND G+ ND + R NG + G GY R
Sbjct: 368 NGGYRNDNGYRNDGYRPRGNGSNGGRGYGR 397
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 126 GAIDNNHGLSNDFGFVNDNHGFRDNGI-DTGSGYNRGR 16
G DN + G+ NDN G+R++G G+G N GR
Sbjct: 357 GNNDNGRPAMRNGGYRNDN-GYRNDGYRPRGNGSNGGR 393
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 30.7 bits (66), Expect = 0.32
Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Frame = -1
Query: 225 RKSDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHG-LSNDFGFVNDNHGFRDNG 49
R D G G D H G G GDG G + D HG R G
Sbjct: 35 RGGDGDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHG-RGGG 93
Query: 48 IDTGSGYN-RGR 16
D G GY+ RGR
Sbjct: 94 GDRGRGYSGRGR 105
Score = 26.2 bits (55), Expect = 7.0
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Frame = -1
Query: 216 DSGCGNDGSRDDHWLGSNGSNVSNLDRLGDG-----AIDNNHGLSN-DFGFVNDNHGFRD 55
D G G G D G G GDG D G S GFV D G
Sbjct: 57 DRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGRGGGGDRGRGYSGRGRGFVQDRDGGWV 116
Query: 54 NGIDTGSGYNRGRAS 10
N + G+ RGR +
Sbjct: 117 NPGQSSGGHVRGRGT 131
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 255 HIDRYSVKGLRKSDSGCGNDGSRDDHWLGSNGSNV 151
H + +++ K ND + DD WL + GSNV
Sbjct: 271 HNSKGNIQSYLKEGPSLSNDNNNDDPWLANPGSNV 305
>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
protein Dof zinc finger protein, Oryza sativa,
EMBL:AB028129
Length = 372
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -1
Query: 174 LGSNGSNVS--NLDRLGDGAIDNNH--GLSNDFGFVNDNHGFRDNGIDTGSGYNRG 19
+G N N+ N GD +NH GL++ G N+N+ NGI TG N G
Sbjct: 217 MGVNNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGG 272
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 252 IDRYSVKGLRKSDSGCGNDGSRDDHWLGS 166
+ R SV GL + CGND SR WL +
Sbjct: 232 VARNSVSGLILAAKSCGNDVSRLTFWLSN 260
>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
SDA1 domain; similar to mystery 45A
(GI:16797816){Drosophila melanogaster}
Length = 804
Score = 27.5 bits (58), Expect = 3.0
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -1
Query: 240 SVKGLRKSDSGCGNDGSRDDHWLG-SNGSNVSNLDRLGD-GAIDNNHGLSNDFGFVNDNH 67
+V+ L++SD+ G+DG +DD + G +V GD G+ D SND +N+
Sbjct: 516 NVELLQESDNESGSDGDQDDDGVELPIGDDVEQELIPGDCGSEDKAEEDSNDGDDMNNTE 575
Query: 66 GFRDNGIDTGSG 31
D+ IDT G
Sbjct: 576 D--DSDIDTSIG 585
>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
weak similarity to Swiss-Prot:P41891 protein gar2
[Schizosaccharomyces pombe]
Length = 669
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 252 IDRYSVKGLRKSDSGCGNDGSRDDHWLGS 166
I R SV GL CGND SR WL +
Sbjct: 241 IARNSVSGLVLVAKSCGNDVSRLTFWLSN 269
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 27.1 bits (57), Expect = 4.0
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = -1
Query: 204 GNDGSRDDHWLGSNG-SNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDTGSGY 28
G GS D G G S R DG+ D++ G S D G DN D+ G
Sbjct: 20 GGGGSGDGSGSGDGGGSGDGGGSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGG 79
Query: 27 NR 22
+R
Sbjct: 80 SR 81
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = -1
Query: 231 GLRKSDSGCGNDG--SRDDHWLG-SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGF 61
G D G DG SRD G S+G + GD + +N+ + G D G
Sbjct: 27 GSGSGDGGGSGDGGGSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGS 86
Query: 60 RDNG 49
DNG
Sbjct: 87 GDNG 90
>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
susceptibility protein (PMR6) identical to powdery
mildew susceptibility protein [Arabidopsis thaliana]
GI:22506901; similar to pectate lyase 2 GP:6606534 from
[Musa acuminata]
Length = 501
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 219 SDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHG 103
S S C DD W S+ +N RL D +I HG
Sbjct: 71 SSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHG 109
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -1
Query: 219 SDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGFRDNGIDT 40
S+ G + + H GSN S+ + G + +NH N G R NG +
Sbjct: 91 SNHSSGTGSTHNGHSSGSNHSSATGSTHNGHTSTGSNHSSGN---------GSRHNGYSS 141
Query: 39 GSGYNRGRAS 10
GS ++ S
Sbjct: 142 GSNHSSSTGS 151
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 234 KGLRKSDSGCGNDGSRDDHWLG 169
+G +SDS G+D DD W G
Sbjct: 77 QGSSRSDSVAGDDSEEDDDWEG 98
>At5g06930.1 68418.m00783 expressed protein
Length = 657
Score = 25.8 bits (54), Expect = 9.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 237 VKGLRKSDSGCGNDGSRDDHWLGSNG--SNVSNLDRLGDGAIDNNHGLSNDFGFV 79
V GL CG+D SR +WL + + +LD G ++ + L D+G V
Sbjct: 262 VSGLSLLLKSCGSDVSRLTYWLSNTVMLREIISLD-FGSSKLNGLNSLKEDWGDV 315
>At2g04063.1 68415.m00388 glycine-rich protein
Length = 112
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 108 HGLSNDFGFVNDNHGFRDNGIDTGSGYNRGRASL 7
H + + G+ + NHG G+ G Y RG+ S+
Sbjct: 41 HHVGHRAGYEHHNHGKYIRGLLGGGKYKRGKQSI 74
>At1g68550.2 68414.m07832 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 324
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 96 NDFGFVNDNHGFRDNG 49
+DFG ++D GF DNG
Sbjct: 266 DDFGLLDDIQGFEDNG 281
>At1g68550.1 68414.m07831 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 324
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 96 NDFGFVNDNHGFRDNG 49
+DFG ++D GF DNG
Sbjct: 266 DDFGLLDDIQGFEDNG 281
>At1g13940.1 68414.m01637 expressed protein
Length = 1005
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 249 DRYSVKGLRKSDSGCGNDGSRDDHWLGSNGSNVSNLDRLGDGAIDNNHGLSNDF 88
DR + + DSGCGN SR +H + N + S+ ++ + +G +D+
Sbjct: 465 DRLQFESNSRFDSGCGN-SSRLNHNMFYNECSTSSKSKVAGTGYNYPNGGRSDY 517
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,606,601
Number of Sequences: 28952
Number of extensions: 93789
Number of successful extensions: 337
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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