Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0115
         (391 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   3.3  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   3.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   7.5  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 289 PASPESHPST 318
           P SPE+HP T
Sbjct: 37  PKSPENHPET 46


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = -2

Query: 207 RGPPESPLQ---VLRPLEPSTQ 151
           RGPP +PLQ   V   L+P  Q
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 228 LPPLPMVRGPPESPLQVL 175
           +PPL    GPP  P  V+
Sbjct: 114 VPPLTPSPGPPSHPYTVI 131


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 289 PASPESHPSTP 321
           P SPES  STP
Sbjct: 421 PESPESSSSTP 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,672
Number of Sequences: 336
Number of extensions: 1554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)