Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0115
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   5.5  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   9.5  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   9.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    24   9.5  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    24   9.5  

>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 132 TLFPNVRAQTALVMTWRLTWRFCWL-LAPEAASEVL 28
           T   N+   T LV       RFCWL L PE  + V+
Sbjct: 5   TRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVI 40


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 257 ISSRLPERPPCRLRQSHILQL 319
           I   L E   CR+R  H+LQL
Sbjct: 496 IDRHLKEYDSCRVRMEHVLQL 516


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 18  PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLP 143
           P+S   P +  +P T K+A+   R  P+PSA A L+T   +P
Sbjct: 382 PSSSRSPSV--DPNTVKSAQHIPRMSPSPSASA-LKTQSHVP 420


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 266 RLPERPPCRLRQSHILQL 319
           R PERPP RL +  ++ L
Sbjct: 96  RFPERPPSRLNKIQVMIL 113


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 99   LVMTWRLTWRFCWLLAPEAASEV 31
            L+ TW  TW   ++  PE ++++
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDL 1440


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 234 LTLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQ 106
           LT P  PM+   PE  L +  PLE   Q V +  T    + A+
Sbjct: 751 LTSPVSPMLEDKPEPGLLIKSPLE-KKQEVNSESTQLDQLLAE 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,846
Number of Sequences: 5004
Number of extensions: 25727
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)