Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0115
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0227 + 13967966-13968559 28 3.0
08_02_1243 - 25527523-25527960,25527993-25528604 27 4.0
08_02_0839 + 21693348-21694853 27 4.0
09_06_0025 + 20308160-20308162,20308194-20308262,20308602-20309213 27 5.3
08_02_1103 - 24329120-24329623 27 5.3
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 5.3
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 27 7.0
07_03_0951 - 22836167-22836358,22836455-22837213 27 7.0
07_01_0479 + 3606663-3607448 27 7.0
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 27 7.0
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 27 7.0
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 26 9.2
11_01_0066 - 536281-537196,537397-537452 26 9.2
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 26 9.2
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 26 9.2
05_01_0012 - 70296-70398,70494-70648,70737-70843,71138-71216,713... 26 9.2
04_04_1413 - 33386049-33386339 26 9.2
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 26 9.2
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 90 TWRLTWRFCWLLAPEAASEVLPKPAAQLVP 1
+W WR C+ L P E P P+AQL P
Sbjct: 13 SWARCWR-CFSLTPYYLLESAPTPSAQLPP 41
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 18 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPA 116
P+S G P + P T A SR P+PS A
Sbjct: 90 PSSRGAPTMCSSPPTQSAAPPGSRCSPSPSPTA 122
>08_02_0839 + 21693348-21694853
Length = 501
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 237 QLTLPPLPMVRGPPESPLQVLRPLEPSTQRV 145
QL LP LP PP+ PL L+P P + V
Sbjct: 22 QLPLPYLPPPPPPPQPPLLQLQPPPPPSSPV 52
>09_06_0025 + 20308160-20308162,20308194-20308262,20308602-20309213
Length = 227
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 243 TDQLTLPPLPMVRGPPES 190
+D L LPP PMV PP +
Sbjct: 197 SDSLLLPPAPMVAAPPSA 214
>08_02_1103 - 24329120-24329623
Length = 167
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 31 DLRCCFGSQQPTKTPSEPP-GHYQRRLRPHVWKQCDHCLHPLC 156
D R C +P + P GH R W DH PLC
Sbjct: 99 DCRVCLARFEPESVVNRLPCGHLFHRACLEKWLDYDHATCPLC 141
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 124 SKRAGADGVGNDLEAHLAFLLVVGSRSSIGGPSEAGSPARA 2
+++A DG G+D AH+A L + G P ++ +P R+
Sbjct: 296 NRQAKPDGNGDDEGAHVAALALAEVFQRGGSPQDSQTPGRS 336
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 285 GGLSGNLELIQRCDTD---QLTLPPLPMVRGPPESPLQVLRPLEPSTQRV 145
GG EL+ + + +L LPP P PP PL+ P PST ++
Sbjct: 3 GGTGPGAELLSPGEAEWPPELRLPPPPPPHPPPPPPLE---PAPPSTPQL 49
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 52 SQQPTKTPSEPPGHYQRRLR 111
S PT TPS+P Y RR R
Sbjct: 63 SPPPTPTPSQPSSSYHRRRR 82
>07_01_0479 + 3606663-3607448
Length = 261
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 237 QLTLPPLPMVRGPPESPLQVLRP 169
Q++ PP+P + PP + QV+RP
Sbjct: 147 QISRPPMPNLSAPPVAYPQVVRP 169
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 13 GCRLRKDLRCCFGSQQPTKTPSEPPGHYQRRLRP----HVWKQCDHCL 144
GCR+ + G Q TK +E GH R +R HV ++C C+
Sbjct: 634 GCRVIQKAIEVVGLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCIECI 681
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 157 NTEGGGNDHIVSKRAGADGVGNDLEAHLAF 68
N +GGG+D I G G G+D +AF
Sbjct: 381 NVDGGGDDEITG--GGGGGAGSDQRVPMAF 408
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 130 IVSKRAGADGVGNDLEAHLAFLLVVGSRSSIGGPSEAGSP 11
IV+ RAG++ VG D++ +LV GS+S + G P
Sbjct: 261 IVTLRAGSEYVGRDVQ---NCVLVAGSQSGVLAAERIGMP 297
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 18 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLPPP 149
PAS PP + P + + S + P P +P T S PP
Sbjct: 212 PASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPP 255
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 108 QTALVMTWRLTWRFCWL 58
QT LV+ W +T CWL
Sbjct: 136 QTVLVLWWTITLSVCWL 152
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = -2
Query: 231 TLPPLPMVRGPPESP---LQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTWRFCW 61
TLP L V PP SP +QVL P+ + P + A + WR+
Sbjct: 48 TLPALADVPAPPPSPTQDVQVLEAPSPAANPFSNALLTAPKPTSSAAADLPEGAQWRYSE 107
Query: 60 LLA 52
L+
Sbjct: 108 FLS 110
>05_01_0012 -
70296-70398,70494-70648,70737-70843,71138-71216,
71343-71423,71556-72581
Length = 516
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 99 LVMTWRLTWRFCWLLAPEAASEVLPKPAAQLVP 1
LV+T +W W EA +LP PAA P
Sbjct: 17 LVLTIVASWYRSWWKTTEAGGPLLPPPAAGAGP 49
>04_04_1413 - 33386049-33386339
Length = 96
Score = 26.2 bits (55), Expect = 9.2
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2
Query: 17 AGFGRTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDS 196
AG GR AA+G + VS V+ A+ V C DGS GR +G
Sbjct: 8 AGLGRGFTAAAGGSVPD---VSRSVVGIALVFVAAVAIVAFVVFNCADGSGGRRRRTGGG 64
Query: 197 GG 202
GG
Sbjct: 65 GG 66
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -2
Query: 216 PMVRGPPESPLQVLRPLEPSTQRVEAMITLFPNVRAQTALVMTWRLTWRFCW 61
P R P S ++ S + + +++T N + +L T W FCW
Sbjct: 1449 PSQRRLPTSTTSLVLQAIWSMRSISSIVTWCNNYCSDISLCSTLTFFWEFCW 1500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,081
Number of Sequences: 37544
Number of extensions: 234472
Number of successful extensions: 1100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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