Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0115
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   1.1  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    27   3.4  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   3.4  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   3.4  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   3.4  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    27   4.5  
At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative...    27   4.5  
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide...    26   7.8  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    26   7.8  

>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 18  PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 149
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 231  TLPPLPMVRGPPES-PLQVLRPLEPSTQRVEAMITLFPNVRAQ 106
            T PP P+   PPE+     ++P E +    E  +T +P +R+Q
Sbjct: 1278 TAPPEPITTAPPETVTTTAVKPTENAA--TERRVTNYPPIRSQ 1318


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
          family protein contains Pfam profile: PF00097 zinc
          finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 10 LGCRLRKDLRCCFGSQQPTKTPSEPP 87
          L C   KDLR CF    P   P  PP
Sbjct: 10 LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 62  QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 184
           +++RQ++L++    +  R F  +   A+T  V G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 225 PPLPMVRGPPESPLQVLRPLEPS 157
           PP P + GPP + + V  P EPS
Sbjct: 77  PPSPSLTGPPPTTIPVSPPPEPS 99


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 231 TLPPLPMVRGPPESPLQVLRPLEPSTQRVEAMIT 130
           TLPP P++  PP  P   L P  P+   +  + T
Sbjct: 285 TLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPT 318



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 231 TLPPLPMVRGPPESPLQVLRPLEPS 157
           +LPP+P++  PP  P   L P  P+
Sbjct: 297 SLPPIPLIPTPPTLPTIPLLPTPPT 321



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 228 LPPLPMVRGPPESPL-QVLRPLEPS 157
           +PP+P++ G P +PL   + PL PS
Sbjct: 370 IPPVPLIPGIPPAPLIPGIPPLSPS 394


>At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative /
           adrenodoxin reductase, putative strong similarity to
           SP|P41345 Ferredoxin--NADP reductase, root isozyme,
           chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
           sativa}, ferredoxin-NADP reductase precursor [Zea mays]
           GI:500751
          Length = 378

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 258 IQRCDTDQLTLPPLPMVRGPPESPLQVLRPLEPSTQRV 145
           +Q+    ++ + PL +   P E+PL + RP EP T  +
Sbjct: 64  LQQSSKSKVLVTPLEL-EDPKETPLNLFRPKEPYTATI 100


>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
           identical to phospholipase D zeta SP:P58766 from
           [Arabidopsis thaliana]; similar to phospholipase D
           [Lycopersicon esculentum] GI:12060550; contains Pfam
           profile PF00614: Phospholipase D. Active site motif
          Length = 820

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 276 SGNLELIQRCDTDQLTLPPLPMVRGPPES--PLQVLRPLE 163
           SG   LI      ++T+PPLP+V+   E    +QV R ++
Sbjct: 438 SGRRYLISMAQLAEITVPPLPIVQPDNEEGWTVQVFRSID 477


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 240 DQLTLPPLPMVRGPPESPLQVLRPLEPSTQ 151
           D L LPP P    PP  P Q L P  PS +
Sbjct: 58  DYLPLPPPPQTPPPPPPP-QSLPPPSPSPE 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,486,310
Number of Sequences: 28952
Number of extensions: 158535
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)