Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0114
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    29   0.48 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.85 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   2.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.5  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.9  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +2

Query: 14  PPCRPNVDTTRA--QMSVLP*SKLPSSHPQSTSPLVPGQLTPLVHILININDAASATPVE 187
           P  RP V  T A   M   P S LP  HP   S      +TP+   L+ +N   S  P  
Sbjct: 188 PHVRPAVGATMAGSAMRTFP-SNLPLGHPPPPSDSANSSVTPIAAPLV-VNGKVSGNPPY 245

Query: 188 SVE-PEQSNVEEKPAVSPVIIADLPS 262
             E    SNV  +      + +++P+
Sbjct: 246 PAEIIPTSNVPNREEKDWTVTSNVPN 271


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 56  SVLP*SKLPSSHPQSTS---PLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEKP 226
           S+LP S  PSS P S++          TPL  +      +AS+TP+ SV    S      
Sbjct: 280 SLLP-SSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATST 338

Query: 227 AVSPV 241
           + +P+
Sbjct: 339 SSTPL 343


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -2

Query: 330 GGVSHDHRGY--TRSLGNNYRARYYDGRSAMITGETAGFSST 211
           GGV  DHRGY  T     N     + G  A+ T     FS T
Sbjct: 245 GGVPTDHRGYMGTHIFRENAFRHKFKGFCAVFTSAAFSFSGT 286


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 65  P*SKLPSSHPQST---SPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEKPAVS 235
           P S +  + P S+   S   P    P+V   ++++ A S  PV ++    SN+   P V+
Sbjct: 695 PASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIV---SNISPLPTVA 751

Query: 236 PVIIADLPS 262
           P  ++  PS
Sbjct: 752 PPNVSGSPS 760


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 74   KLPSSHPQSTSPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEKPA 229
            K+ +  P++   +VP    P     ++++   S   VE  EP  +   E+PA
Sbjct: 884  KIENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDVEKQEPSSA---EQPA 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,765
Number of Sequences: 5004
Number of extensions: 33844
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)