Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0114
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.30 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.30 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 354  VHWARGHNGGVSHDHRGYT 298
            +HW  GHNGG S    GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 354  VHWARGHNGGVSHDHRGYT 298
            +HW  GHNGG S    GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 336 HNGGVSHDHRGYTRSLGNNYRARYYD 259
           +N   ++++  Y  +  NNY+  YY+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYN 355


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 318 HDHRGYTRSLGNNYRARYYD 259
           H++  Y  +  NNY+  YY+
Sbjct: 91  HNNNNYNNNNYNNYKKLYYN 110


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 4    HEAAAVPAKRGHYESPDVGPALVEAPIVPSPVHVTPR 114
            H AA +     H + P V  A   AP+V   VH + R
Sbjct: 1090 HGAAGLRLCLHHRDLPCVLRASTPAPVVLEAVHASRR 1126


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 318 HDHRGYTRSLGNNYRARYYD 259
           +++  Y  +  NNY+  YY+
Sbjct: 335 NNYNNYNNNYNNNYKKLYYN 354


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 321 SHDHRGYTRSLGNNYRARYYD 259
           ++++  Y +   NNYR  YY+
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYN 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 650 VIWLFFYILEMISNDNWFHSDWLDGTDDDRL 558
           V+ L  Y+L+  S    F     DGT++D L
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDGTEEDAL 608


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 28  KRGHYESPDVG 60
           KRG YE P VG
Sbjct: 610 KRGKYEEPTVG 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,362
Number of Sequences: 438
Number of extensions: 2369
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)