Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0113
         (581 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    139   5e-35
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   1.4  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.1  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   7.2  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.5  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   9.5  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  139 bits (337), Expect = 5e-35
 Identities = 67/69 (97%), Positives = 69/69 (100%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  139 bits (337), Expect = 5e-35
 Identities = 67/69 (97%), Positives = 69/69 (100%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  139 bits (337), Expect = 5e-35
 Identities = 67/69 (97%), Positives = 69/69 (100%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 576 LSSDTVSRFYLKSIIHSSRERFFRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 418
           L S TV    +  +I  + E    L GTY   ++F    +V L  VV   HHR
Sbjct: 270 LVSQTVFSLLVGHVITKTSEAV-PLLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 504 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 418
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 23   CKIFVKTLTGKTITLEVEPSDTIENVKAK 109
            C+I+ K    +TI    +P   ++ VKAK
Sbjct: 956  CEIYTKRSIIRTIAKIYDPLGIVDTVKAK 984


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 477 VFEDHRAVTLPAVVTVLHHRHE 412
           +F DHR    PA V  L   HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 187 PLGLQYPEGIHPPPGV 234
           P G+  P G H PPG+
Sbjct: 5   PPGVNRPPGSHRPPGL 20


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,152
Number of Sequences: 2352
Number of extensions: 12135
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)