Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0111
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   4.1  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   7.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.5  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 186 LSTATTFHGEFYD-PAYRRIIAGSPVAVSPV 275
           +ST  + +G +Y  PA    +AG P+A++PV
Sbjct: 213 VSTIVSQNGTYYSIPAVNHPMAGQPIAIAPV 243


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 368  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGRSSDN-ATVCRIV 219
            W +LLV  +  C NS   +R+G  Q   +IF+ + C    ++  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN-SQCSKLGTNAWASCCQLV 1073


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 685 PKDTMPTSAFWKKAGHPSQYCRSRGHQPGPNRRRICYQSRRDH 557
           P  +   S +  K+ H S+Y R+R   PG N      QS   H
Sbjct: 195 PSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 130 LESMVPTVRWILFSPTTTTFQLLPLSMENSTILHTVALSLDLPS 261
           L S +P + +  +SP     + L  S+    IL+ + +S+ LPS
Sbjct: 163 LLSSLPIIGYSAYSPVKAAVRNLADSLRQECILYDIEVSVYLPS 206


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 122  LPILNQWFQQCAGYCSHQLPLPF 190
            LP L +  + C+G+C+  L +PF
Sbjct: 1427 LPSLFKAMRACSGFCNESLHIPF 1449


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 167  NNIQRTVGTIDSRWVGILQFGPGW 96
            N++  T+ T++ RW+  L +  GW
Sbjct: 1177 NSLMTTITTLEDRWLFALLYRVGW 1200


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 128 ILNQWFQQCAGYCSHQLPLPF----NCYHFPWRILRSCIPSHYRWISRRSEPGEISYVHF 295
           +L Q+ Q    + +H     F    N YH   R   SCI ++Y   +     G  S+  F
Sbjct: 28  LLTQYIQPTFFWFAHDETPSFKWVLNAYHERLRSCTSCIQAYYELRNESLAKGSYSFTGF 87

Query: 296 AV 301
           ++
Sbjct: 88  SI 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,992
Number of Sequences: 5004
Number of extensions: 77024
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)