Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0111
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1002 - 26826316-26826522                                         31   0.80 
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   1.1  
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998...    31   1.4  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   4.3  
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212...    29   5.7  
05_03_0586 + 15782645-15782721,15782781-15783405                       29   5.7  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   9.9  

>06_03_1002 - 26826316-26826522
          Length = 68

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 584 SAPVWSGLVAATTTILTWVPCLLPKCASRHRIFWKEQC 697
           S P   G VAAT     WV C LP C +  R F    C
Sbjct: 18  SCPYCGGGVAATDVEAKWVLCFLPLCLNNKRRFSCTAC 55


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 100  PGPN*SIPTHLESMVPTVRWILFSPTTTTFQLLP 201
            PGP  S PTH    VPT+ +  +SP  T F  LP
Sbjct: 947  PGPQVSFPTHQGENVPTLLFSPYSP-ATKFLFLP 979


>12_01_0983 -
           9979572-9980570,9980878-9981544,9982864-9983217,
           9983334-9983668
          Length = 784

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 562 DHDPCTVPCSFLCWSQ*VELVEVAVRYTAALNGSSPSEQINK 437
           +H   ++ C F  WS  VE  E AVR  A+ +   P+ +IN+
Sbjct: 725 EHLEVSINCHFATWSG-VEAAEAAVRNAASAHPGCPTVEINR 765


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 529 LCWSQ*VEL-VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 362
           L WS    + V++A ++   L  +   E I  N L  +D +LDN+TL+  ++ +  M
Sbjct: 289 LSWSSDSSMNVDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344


>06_03_0033 +
           15719864-15720049,15720139-15720601,15720638-15721254,
           15721300-15721869,15723625-15724140
          Length = 783

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
 Frame = +2

Query: 455 WGTTVQGGSVSDGNLHKLNSL*PTKKTAGNS-TRVMI--AS*LITNSAPVWSGLVAATTT 625
           W T   G S   G   +  ++   ++ + +S T V +  A    T  AP W+ +   +  
Sbjct: 609 WKTPTVGESRVGGTYRETRNITRNERESSSSLTPVQMYEAGWAPTGDAPEWTQVPRHSIR 668

Query: 626 ILTWVPCLLPKCASRHRIFWKEQCQ*HLPRSTHSISSFTEW 748
           + TW      +  + H I W E      PRS+    S +EW
Sbjct: 669 VSTWASASEDRWHAPHDIHWGEN---QPPRSSDVPPSPSEW 706


>05_03_0586 + 15782645-15782721,15782781-15783405
          Length = 233

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 667 TSAFWKKAGHPSQYCRSRGHQPGPNR 590
           +SA WK  GH  Q C   GH PG  R
Sbjct: 148 SSACWKAVGHDDQQC---GHCPGQRR 170


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 328 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 438
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,396,540
Number of Sequences: 37544
Number of extensions: 549943
Number of successful extensions: 1485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)