Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0111
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.9
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_965| Best HMM Match : IgG_binding_B (HMM E-Value=8.5) 30 2.5
SB_17888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_10652| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 29 4.4
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 28 7.6
SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3) 28 7.6
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 251 ISRRSEPGEISY-VHFAVNHPEFSEENYDKDVSIVRVTHAIHF 376
I ++ E E SY HP +S ++YD D++++R+ + F
Sbjct: 180 IRQKIEKTEQSYDAEMYKIHPHYSPDSYDSDIALIRLAQPVTF 222
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 490 RQPPQAQLIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 639
R P QA L + + ENCR +Y V + CAG R+ N D G
Sbjct: 906 RHPQQAMLPIASHENCRRKY---GDVSSTAHLCAGEARSDAAGGCNGDSG 952
>SB_965| Best HMM Match : IgG_binding_B (HMM E-Value=8.5)
Length = 174
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 143 FQQCAGYCSHQLPLPFNCYHFPWRILRS 226
F+ YC H PLPF+ H P L S
Sbjct: 57 FRAAVAYCRHAFPLPFSSTHTPGDPLES 84
>SB_17888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 143 FQQCAGYCSHQLPLPFNCYHFP 208
F+ YC H PLPF+ H P
Sbjct: 58 FRAAVAYCRHAFPLPFSSTHTP 79
>SB_10652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 143 FQQCAGYCSHQLPLPFNCYHFP 208
F+ YC H PLPF+ H P
Sbjct: 58 FRAAVAYCRHAFPLPFSSTHTP 79
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = -3
Query: 609 TSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNELSLWRLPSDTLPP*TVVPHPSRSTKIP 430
+S +QT + + L ++P + ++ W++P+ TLP T + K+P
Sbjct: 213 SSDNQTTLVPTVVKPEFLPLTVYPVIINDNDRAINYWQIPNSTLPRPTWIALSQEEYKVP 272
>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 143 FQQCAGYCSHQLPLPFNCYHFP 208
F+ YC H PLPF+ H P
Sbjct: 58 FRAAVAYCRHACPLPFSSTHTP 79
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 502 QAQLIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 639
+A + V N C++ Y+ VT N CAG + RD N D G
Sbjct: 1316 EAIVPVVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSG 1360
>SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 209 WRILRS---CIPSHYRWISRRSEPGE 277
WRILR+ C HYR+ R EPGE
Sbjct: 99 WRILRTKTTCPVRHYRFNRRVQEPGE 124
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 640 HPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 542
+PS+ C + P +++ YQS+ HD C +
Sbjct: 171 NPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)
Length = 265
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 209 WRILRS---CIPSHYRWISRRSEPGE 277
WRILR+ C HYR+ R EPGE
Sbjct: 63 WRILRTKTKCPVRHYRFNRRVQEPGE 88
>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 155 AGYCSHQLPLPFNCYHFPWRI 217
AGYC + +PF CY F R+
Sbjct: 6 AGYCEPRKNVPFECYRFNKRV 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,564,604
Number of Sequences: 59808
Number of extensions: 624645
Number of successful extensions: 1477
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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