Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0111
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.55 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.3  
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.9  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.9  

>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = -2

Query: 655 WKKAGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VELVEVAVRYT 479
           W +    +++C    +   P    ICY S+RD    T  C    C+    ++  V  +  
Sbjct: 375 WLQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGC 434

Query: 478 AALNGSSPSEQINKNTLGYY---DTLLDNSTLL 389
           +++N  +P E+     LGYY   D  L N  LL
Sbjct: 435 SSVNDEAPEEEKRLGKLGYYTYCDENLCNGDLL 467


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 340 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 441
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 364 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 495
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 340  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 435
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/86 (25%), Positives = 31/86 (36%)
 Frame = +1

Query: 388 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQAQLIVTNKENCREQYKGHDRV 567
           PAG ++ T C N PGY+    + G      QC    P        N  NC       D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319

Query: 568 VTDNKFCAGLVRAGGRDYDNTDLGAL 645
           +T   F           Y  + LG++
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGSM 345


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 643 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 542
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 222 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 643 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 542
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 341 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,229,502
Number of Sequences: 27780
Number of extensions: 448380
Number of successful extensions: 1210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)