Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0111
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.51 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.51 
At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    30   1.5  
At1g26860.1 68414.m03276 hypothetical protein                          28   6.2  
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    28   8.3  
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    28   8.3  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 436 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 332
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 436 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 332
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -2

Query: 691 LFPKDTMPTSAFWKKAGHPSQYCRSRGHQPGP---NRRRICYQSRRDHDPCTVPCSFLCW 521
           +F +DT P  A WK+ G       S G    P    RRRI  QS  +H       +  CW
Sbjct: 228 IFSEDTKPELALWKRWGLAQAVTTSAGLASYPLDTVRRRIMMQSGMEHP--MYRSTLDCW 285

Query: 520 SQ*VELVEVAVRYTAALN 467
            +      +A  Y  AL+
Sbjct: 286 KKIYRSEGLASFYRGALS 303


>At1g26860.1 68414.m03276 hypothetical protein
          Length = 240

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 167 SHQLPLPFNCYHFPWRILRSCIP 235
           S ++  P   YHF W+IL  C+P
Sbjct: 18  SWKVQCPPKLYHFLWQILAGCVP 40


>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 233 PSHYRWISRRSEPGEISYVHFAVNHPEFSEENYDKDVSIVRV 358
           PS + W+ +  E GE+S +    +    ++E+    V+ V +
Sbjct: 691 PSKFEWLRKNKETGELSLISAGTSEYTLTQEDVGTHVTFVYI 732


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 664 SAFWKKAGHPSQYCRSRGHQPGPNRRRICYQSRRD 560
           S FWKK G      R RG++     +R+     RD
Sbjct: 85  SGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRD 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,144,190
Number of Sequences: 28952
Number of extensions: 413848
Number of successful extensions: 1125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)