Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0110
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 144 1e-35
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 118 7e-28
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 97 2e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 88 2e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 79 1e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 76 5e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 73 5e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 72 8e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 71 2e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 71 2e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 66 4e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 7e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 1e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 58 1e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 5e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 1e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 3e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 5e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.11
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 31 0.14
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 27 3.1
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 9.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 144 bits (349), Expect = 1e-35
Identities = 68/94 (72%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Frame = +3
Query: 240 HVCVWGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 416
+ CV+G P+ Q RDL RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMG
Sbjct: 226 NTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMG 285
Query: 417 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
FEPQIRKI++QIRPDRQT+M+SATWPKEV+ L R
Sbjct: 286 FEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Score = 98.3 bits (234), Expect = 1e-21
Identities = 46/66 (69%), Positives = 52/66 (78%)
Frame = +1
Query: 58 TTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 237
+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +R
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 238 NTCVFG 255
NTCV+G
Sbjct: 226 NTCVYG 231
Score = 81.4 bits (192), Expect = 1e-16
Identities = 38/87 (43%), Positives = 60/87 (68%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
+ LA DYL DYIQ+ +GSL L+A+HNI QIV++ +K +L ++E+ + ++ K
Sbjct: 315 QRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRD--NKV 372
Query: 683 IIFVETKRKAENISRNIRRYGWPAVCI 763
+IF TKR A++I+R +R+ GWPA+ I
Sbjct: 373 LIFTGTKRVADDITRFLRQDGWPALAI 399
Score = 34.7 bits (76), Expect = 0.015
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQ Q WP+AMSG+++VG+
Sbjct: 147 PIQQQAWPMAMSGRDMVGI 165
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 118 bits (285), Expect = 7e-28
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEP 425
GAP ++Q DL+RG EIV+ TPGR+ID L TNL RCTYLVLDEADRM D+GFEP
Sbjct: 528 GAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEP 587
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
Q+ +II IRPDRQT+++SAT+P+ ++ L R
Sbjct: 588 QVMRIINNIRPDRQTVLFSATFPRAMEALAR 618
Score = 68.9 bits (161), Expect = 8e-13
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 464 TGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRAC 523
Query: 244 CVFG 255
C +G
Sbjct: 524 CAYG 527
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/92 (51%), Positives = 67/92 (72%), Gaps = 4/92 (4%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 434
GA R Q R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR
Sbjct: 292 GADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIR 351
Query: 435 KIIEQIR----PDRQTLMWSATWPKEVKNLLR 518
I+E +RQTLM+SAT+P++++ L R
Sbjct: 352 HIVEGADMTSVEERQTLMFSATFPRDIQLLAR 383
Score = 47.2 bits (107), Expect = 3e-06
Identities = 31/95 (32%), Positives = 50/95 (52%)
Frame = +2
Query: 509 LAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTII 688
LA D+L DY+ +++G + S + NI Q V ++ EK + L +L + P T+I
Sbjct: 381 LARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLI 435
Query: 689 FVETKRKAENISRNIRRYGWPAVCIMAIKLTRRDE 793
FVETKR A+ ++ + +PA I + R E
Sbjct: 436 FVETKRMADTLTDYLLNSNFPATSIHGDRTQRERE 470
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Frame = +1
Query: 64 TGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQV 204
TGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 215 TGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEE 274
Query: 205 AADFGHTSYVRNTCVFG 255
+ F + S+VR V+G
Sbjct: 275 SRKFCYRSWVRPCAVYG 291
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 87.8 bits (208), Expect = 2e-18
Identities = 47/92 (51%), Positives = 59/92 (64%), Gaps = 6/92 (6%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 434
GAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR
Sbjct: 273 GAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIR 331
Query: 435 KIIEQIRPD------RQTLMWSATWPKEVKNL 512
II PD RQT+ +SATWP+ V+ L
Sbjct: 332 NIISH-TPDPTRNGSRQTVFFSATWPESVRAL 362
Score = 48.4 bits (110), Expect = 1e-06
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +2
Query: 449 NTPRQTDFDVVSYLAQRSEELAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKEN 625
N RQT F ++ + LA +L D ++I IGS +L+A+ NI QIV+I + KE
Sbjct: 343 NGSRQTVFFSATW-PESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKER 401
Query: 626 KLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRR 739
L+ LL++ S K +IFV K++A + + R
Sbjct: 402 MLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLAR 439
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 192
TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 211 TGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGVPQ 64
PIQA WP ++G+++VG+ +
Sbjct: 190 PIQAATWPYLLAGRDVVGIAE 210
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.6 bits (185), Expect = 1e-15
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 19/109 (17%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 428
V G EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE
Sbjct: 360 VGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDD 419
Query: 429 IRKIIEQIRPD-------------------RQTLMWSATWPKEVKNLLR 518
+ KI+ + RQT+M+SAT P V NL +
Sbjct: 420 VNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAK 468
Score = 59.7 bits (138), Expect = 5e-10
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYV 234
TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 295 TGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGF 354
Query: 235 RNTCVFG 255
R V G
Sbjct: 355 RCVSVVG 361
Score = 39.9 bits (89), Expect = 4e-04
Identities = 28/102 (27%), Positives = 50/102 (49%)
Frame = +2
Query: 488 LAQRSEELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQE 667
L R LA+ YL + + + IG++ + + + Q V++ + K+ + ++EI +S
Sbjct: 459 LPPRVANLAKSYLIEPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRR---VEEILESNR 514
Query: 668 PGAKTIIFVETKRKAENISRNIRRYGWPAVCIMAIKLTRRDE 793
IIFV KR E I++ + GW AV + K + E
Sbjct: 515 FSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRE 556
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 76.2 bits (179), Expect = 5e-15
Identities = 41/97 (42%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMG 416
+ + GA +R +A L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++G
Sbjct: 194 IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIG 252
Query: 417 FEPQIRKIIEQI-RPDRQTLMWSATWPKEVKNLLRIT 524
FE ++R+I++ + +RQTL++SAT +V++L RI+
Sbjct: 253 FEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARIS 289
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +1
Query: 64 TGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 135 TGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 72.9 bits (171), Expect = 5e-14
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGF 419
+C+ G + Q ++L + +IVIATPGR ID + ++ +V+DEADRML+ GF
Sbjct: 363 LCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLRITWETTFRSI*DH 557
++ +II+ RQT+++SAT +V +L+R++ R D+
Sbjct: 423 ADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Score = 43.2 bits (97), Expect = 4e-05
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF- 216
K+ TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 217 GHTSYVRNTCVFGVLLK 267
T + C+ G+ LK
Sbjct: 355 SFTDIMVCLCIGGLSLK 371
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 72.1 bits (169), Expect = 8e-14
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMG 416
V V G QA L + +++ TPGRL+D LE KG + L+ YL++DEADR+LDM
Sbjct: 147 VIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMD 205
Query: 417 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
F P I KI++ I +R+TL++SAT +V+ L R
Sbjct: 206 FGPIIDKILKIIPHERRTLLFSATMTSKVEKLQR 239
Score = 45.6 bits (103), Expect = 8e-06
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 240
TGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR+
Sbjct: 92 TGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
Query: 241 TCVFG 255
+ G
Sbjct: 146 VVIVG 150
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 70.9 bits (166), Expect = 2e-13
Identities = 37/114 (32%), Positives = 57/114 (50%)
Frame = +3
Query: 174 QRVSTTNSASCCRFWTHILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGT 353
+ ++ S C H+ V G R+ L V IV+ TPGR++D KG
Sbjct: 122 RELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGV 181
Query: 354 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLL 515
+ CT V+DEAD++L F P I +++ +RQ ++SAT+P VKN +
Sbjct: 182 ADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFM 235
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 219
R G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/88 (37%), Positives = 49/88 (55%)
Frame = +3
Query: 240 HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
H C+ G R+ L+ GV +V+ TPGR+ D +++ VLDEAD ML GF
Sbjct: 119 HACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGF 178
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEV 503
+ QI I + + P Q ++ SAT P++V
Sbjct: 179 KDQIYDIFQLLPPTAQVVLLSATMPQDV 206
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-N 240
+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V +
Sbjct: 65 SGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECH 119
Query: 241 TCVFGVLLKE 270
C+ G L+++
Sbjct: 120 ACIGGTLVRD 129
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.5 bits (155), Expect = 4e-12
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Frame = +3
Query: 144 WSDCFGLGAYQRVSTTNSASCCRFWTHILC------S*HVCVWGAPKREQARDLERGVEI 305
W+ GLGA +S T + F T + S + + G +E+ L R + I
Sbjct: 106 WTSLDGLGALV-ISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNI 163
Query: 306 VIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 482
++ TPGRL+ +++ + L+LDEADR+LDMGF + I+ + RQT+++S
Sbjct: 164 LVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFS 223
Query: 483 ATWPKEVKNLLRIT 524
AT K VK+L R++
Sbjct: 224 ATQTKSVKDLARLS 237
Score = 42.3 bits (95), Expect = 8e-05
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVRN 240
TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G S+
Sbjct: 85 TGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSAG 143
Query: 241 TCVFGVLLKESK 276
+ G KE K
Sbjct: 144 LIIGGNNYKEEK 155
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/94 (32%), Positives = 49/94 (52%)
Frame = +3
Query: 222 HILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 401
H+ H C+ G + L+ G +V TPGR+ D + + + L+LDEAD
Sbjct: 115 HMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADE 174
Query: 402 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEV 503
+L+ GF+ QI I + P Q ++ SAT P++V
Sbjct: 175 LLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDV 208
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 154 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 255
AL+L+PTRELA QIQ V G H + + C+ G
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/83 (39%), Positives = 47/83 (56%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 428
V G EQ L +IV+ATPGR + + L Y+V DEADR+ +MGF Q
Sbjct: 174 VGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQ 233
Query: 429 IRKIIEQIRPDRQTLMWSATWPK 497
+ +I+ + RQTL++SAT P+
Sbjct: 234 LTEILHALPTSRQTLLFSATLPR 256
Score = 46.8 bits (106), Expect = 4e-06
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 115 TGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSV 171
Query: 244 CVF-GVLLKE 270
+ GV L+E
Sbjct: 172 AIVGGVSLEE 181
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 61.7 bits (143), Expect = 1e-10
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +3
Query: 219 THILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEA 395
+H + S +V + G K+ + + +GV I+I TPGRL D LE ++ + ++VLDE
Sbjct: 245 SHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEG 303
Query: 396 DRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP-KEVKNLLRITWETTFRSI*D 554
DR++DMGFE + KI+ + + + P ++V L T + T + + D
Sbjct: 304 DRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVA 207
TGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 187 TGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.0 bits (134), Expect = 1e-09
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Frame = +3
Query: 249 VWGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFE 422
+ G K + + RG ++IATPGRL D L+ T +LDEADR++DMGF
Sbjct: 147 IGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFA 206
Query: 423 PQIRKIIEQIRPDR-QTLMWSATWPKEVKNLLRITWETTFRSI 548
I I E + + + L +SAT P +V N+ R T F+ I
Sbjct: 207 ESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLI 249
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TG+GKTLA++L A + P +++L+PTRELA QI + A + + +R +
Sbjct: 85 TGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVS 144
Query: 244 CVFG 255
G
Sbjct: 145 YAIG 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/78 (38%), Positives = 48/78 (61%)
Frame = +3
Query: 288 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 467
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 468 TLMWSATWPKEVKNLLRI 521
T ++SAT V + L+I
Sbjct: 188 TGLFSATMNDTVSSFLKI 205
Score = 46.8 bits (106), Expect = 4e-06
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
K+ TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMG 416
V G Q+ DL + +V+ATPGRL D + E+ L+R +LV+DEADR+L
Sbjct: 110 VGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPT 169
Query: 417 FEPQIRKIIEQI--RPDRQTLMWSATWPKEVKNL 512
F + + DRQTL+++AT ++ L
Sbjct: 170 FADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +++
Sbjct: 53 TGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHA 107
Query: 244 CVFG 255
+ G
Sbjct: 108 LIVG 111
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +3
Query: 300 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 479
+IVIATP R + + G L + +LV+DEAD ML G+ ++ + + Q+ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLM 201
Query: 480 SATWPKEVKNLLRITWETTF 539
SAT K + +L ++ F
Sbjct: 202 SATLSKNIASLQKLVCRNPF 221
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 204
K+ + TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQ 428
G ++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+L +
Sbjct: 229 GLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEE 288
Query: 429 IRKIIE----QIRPDRQTLMWSATWPKEVKNLLR 518
+ K++E + RQT ++SAT+ + ++ L+
Sbjct: 289 LSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLK 322
Score = 39.5 bits (88), Expect = 5e-04
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 201
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Frame = +3
Query: 243 VCVWGAPK--REQARDL-----ERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEAD 398
VC W K R + L E ++++++TPGRL+D + + +LQ Y+V+DEAD
Sbjct: 236 VCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEAD 295
Query: 399 RMLDMGFEPQIRKIIEQI 452
R+LD F+ + ++ +I
Sbjct: 296 RLLDQSFQDWVDTVMMEI 313
Score = 33.9 bits (74), Expect = 0.027
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 195
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 270 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIE 446
E +D + IV+ATPGRL + + + + VLDE D++L+ + I+++
Sbjct: 165 EAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFR 224
Query: 447 QIRPDRQTLMWSATWPKEVKNLLR 518
P +Q +M+SAT E++ + +
Sbjct: 225 ATPPQKQVMMFSATLSNEIRPICK 248
Score = 33.5 bits (73), Expect = 0.036
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +2
Query: 452 TPRQTDFDVVSY-LAQRSEELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENK 628
TP Q + S L+ + + ++ + ++I + H + Q +E K K
Sbjct: 226 TPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRK 285
Query: 629 LNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
+N LL + +Q +IFV++ +A + R +R +P++CI
Sbjct: 286 INDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPSICI 325
Score = 30.3 bits (65), Expect = 0.33
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFGHTSYVRN 240
+G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 97 SGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVR 150
Query: 241 TCVF--GVLLKE 270
T VF G+ +K+
Sbjct: 151 TAVFYGGINIKQ 162
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +3
Query: 300 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLM 476
+IVI TPG ++D +++ + + VLDEAD MLD G Q +I + + Q ++
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 291
Query: 477 WSATWPKEVK 506
+SAT+ + V+
Sbjct: 292 FSATFSERVE 301
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 234
++ +G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G Y
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG--KYT 211
Query: 235 RNTCVFGVLLKESKP 279
FG+ K+S P
Sbjct: 212 EVKTAFGI--KDSVP 224
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 267 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 446
+E+A L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILS 215
Query: 447 QIRPDR-QTLMWSATWPKEVKNLLRITWETTFRSI 548
++SAT P V+ L ++ R I
Sbjct: 216 ACTSSNICKSLFSATIPSRVEELAKVVTVDPIRII 250
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 207
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 195
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 195
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 279 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR 455
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 456 PDRQT 470
QT
Sbjct: 195 ESLQT 199
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -3
Query: 337 KSINLPGVAMTISTPLSKSRACS-LLGAPQT---HTCYEHKMCVQNLQQLAEFVVLTLW* 170
KSI + IS LS R + LL +P+T + + K+ N + F+ L
Sbjct: 224 KSIEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSKSKVRNSNSTKRRNFISLISMI 283
Query: 169 APRPKQSDHHLS 134
+PRP S HH +
Sbjct: 284 SPRPNLSTHHFN 295
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +3
Query: 57 YHNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 215
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 216 W 218
W
Sbjct: 89 W 89
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 713 QLFSWFQQKLLFSHQVLDFVQFLA 642
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 189
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,473,382
Number of Sequences: 5004
Number of extensions: 74924
Number of successful extensions: 312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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