Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0110
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       91   8e-21
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   10.0 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 91.5 bits (217), Expect = 8e-21
 Identities = 49/96 (51%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
 Frame = +3

Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
           V   G     Q   L  G  I++ATPGRL+DF+EKG        +LVLDEADRMLDMGF 
Sbjct: 306 VAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFL 365

Query: 423 PQIRKII--EQIRP--DRQTLMWSATWPKEVKNLLR 518
           P I K++  E + P  +RQTLM+SAT+P EV++L R
Sbjct: 366 PSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLAR 401



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 23/97 (23%), Positives = 50/97 (51%)
 Frame = +2

Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
           + LA  +L +Y+ + +G +  + +       ++ + ++K++ L  +L+    S   G  T
Sbjct: 397 QHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVAR-NKKKDLLKEILERENDSGTLGG-T 454

Query: 683 IIFVETKRKAENISRNIRRYGWPAVCIMAIKLTRRDE 793
           ++FVE K+KA+ I+  +    +P   I   +L R+ E
Sbjct: 455 LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 64  TGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 231
           TGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S 
Sbjct: 242 TGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSI 301

Query: 232 VRNTCVFG 255
           ++    +G
Sbjct: 302 LKTVVAYG 309



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   PIQAQGWPIAMSGKNLVGVPQ 64
           P+Q    PI M+G++L+   Q
Sbjct: 221 PVQKHALPIIMNGRDLMACAQ 241


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 458 RQTDFDVVSYLAQRSEELAED 520
           RQ+ F+V S L +   E AED
Sbjct: 40  RQSSFEVTSLLMREETEDAED 60


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 608 EHEKENKLNVLLQEIG 655
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,496
Number of Sequences: 438
Number of extensions: 5111
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)