Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0110
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 151 4e-37
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 151 4e-37
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 146 1e-35
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 123 2e-28
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 123 2e-28
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 123 2e-28
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 122 2e-28
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 122 3e-28
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 114 6e-26
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 111 5e-25
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 111 7e-25
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 111 7e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 108 4e-24
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 106 2e-23
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 106 2e-23
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 96 3e-20
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 90 2e-18
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 89 2e-18
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 87 1e-17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 86 2e-17
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 85 4e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 81 8e-16
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 77 1e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 76 3e-14
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 75 5e-14
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 75 5e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 75 7e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 75 7e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 75 7e-14
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 74 1e-13
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 73 2e-13
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 73 2e-13
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 72 5e-13
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 71 9e-13
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 71 1e-12
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 71 1e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 70 2e-12
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 70 2e-12
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 70 2e-12
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 69 3e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 69 4e-12
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 69 5e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 68 8e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 68 8e-12
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 66 2e-11
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 64 1e-10
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 63 2e-10
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 63 2e-10
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 63 2e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 63 2e-10
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 60 2e-09
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 55 6e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 8e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 50 2e-06
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 50 2e-06
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 50 2e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 49 3e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 48 7e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 9e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 44 2e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.006
At2g28600.1 68415.m03476 expressed protein 37 0.018
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.054
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 29 2.7
At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to b... 29 3.6
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)... 29 4.7
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 28 6.2
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 6.2
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.2
At3g10350.1 68416.m01241 anion-transporting ATPase family protei... 28 8.2
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 151 bits (367), Expect = 4e-37
Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 1/102 (0%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFE
Sbjct: 271 CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFE 330
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNLLRITWETTFRSI 548
PQIRKI+ QIRPDRQTL+WSATWP+EV+ L R +++I
Sbjct: 331 PQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+T
Sbjct: 211 TGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRST 270
Query: 244 CVFG 255
C++G
Sbjct: 271 CIYG 274
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
E LA +L D + IGS L AN +I Q+++I EK N+L LL+++ G+K
Sbjct: 358 ETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKI 413
Query: 683 IIFVETKRKAENISRNIRRYGWPAVCI 763
+IFVETKR + ++R +R GWPA+ I
Sbjct: 414 LIFVETKRGCDQVTRQLRMDGWPALAI 440
Score = 37.1 bits (82), Expect = 0.013
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGVPQ 64
PIQAQGWP+A+ G++L+G+ +
Sbjct: 190 PIQAQGWPMALKGRDLIGIAE 210
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 151 bits (367), Expect = 4e-37
Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 1/102 (0%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q RDL RGVEIVIATPGRLID LE TNL+R TYLVLDEADRMLDMGFE
Sbjct: 271 CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFE 330
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNLLRITWETTFRSI 548
PQIRKI+ QIRPDRQTL+WSATWP+EV+ L R +++I
Sbjct: 331 PQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+T
Sbjct: 211 TGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRST 270
Query: 244 CVFG 255
C++G
Sbjct: 271 CIYG 274
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/87 (41%), Positives = 53/87 (60%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
E LA +L D + IGS L AN +I Q+++I EK N+L LL+++ G+K
Sbjct: 358 ETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKI 413
Query: 683 IIFVETKRKAENISRNIRRYGWPAVCI 763
+IFVETKR + ++R +R GWPA+ I
Sbjct: 414 LIFVETKRGCDQVTRQLRMDGWPALAI 440
Score = 37.1 bits (82), Expect = 0.013
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGVPQ 64
PIQAQGWP+A+ G++L+G+ +
Sbjct: 190 PIQAQGWPMALKGRDLIGIAE 210
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 146 bits (355), Expect = 1e-35
Identities = 67/90 (74%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G PK Q RDL++GVEIVIATPGRLID +E TNL+R TYLVLDEADRMLDMGF+
Sbjct: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD 264
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+ IRPDRQTL WSATWPKEV+ L
Sbjct: 265 PQIRKIVSHIRPDRQTLYWSATWPKEVEQL 294
Score = 97.9 bits (233), Expect = 7e-21
Identities = 43/64 (67%), Positives = 53/64 (82%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++ T
Sbjct: 145 TGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTT 204
Query: 244 CVFG 255
C++G
Sbjct: 205 CIYG 208
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
E+L++ +L + ++ IGS L AN I QIVD+ E +K NKL LL++I G++
Sbjct: 292 EQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI----MDGSRI 347
Query: 683 IIFVETKRKAENISRNIRRYGWPAVCI 763
++F++TK+ + I+R +R GWPA+ I
Sbjct: 348 LVFLDTKKGCDQITRQLRMDGWPALSI 374
Score = 37.1 bits (82), Expect = 0.013
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGVPQ 64
PIQ+QGWP+AM G++L+G+ +
Sbjct: 124 PIQSQGWPMAMKGRDLIGIAE 144
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 123 bits (296), Expect = 2e-28
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFE
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+++I RQTLM++ATWPK V+ +
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + T
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 244 CVFG 255
C++G
Sbjct: 263 CLYG 266
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 506 ELAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
++A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKV 406
Query: 683 IIFVETKRKAENISRNI-RRYGWPAV 757
IIF TKR + ++RN+ R++G A+
Sbjct: 407 IIFCSTKRMCDQLTRNLTRQFGAAAI 432
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ WPIAM G+++V +
Sbjct: 183 PIQAQSWPIAMQGRDIVAI 201
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 123 bits (296), Expect = 2e-28
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFE
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+++I RQTLM++ATWPK V+ +
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + T
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 244 CVFG 255
C++G
Sbjct: 263 CLYG 266
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 506 ELAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
++A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKV 406
Query: 683 IIFVETKRKAENISRNI-RRYGWPAV 757
IIF TKR + ++RN+ R++G A+
Sbjct: 407 IIFCSTKRMCDQLTRNLTRQFGAAAI 432
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ WPIAM G+++V +
Sbjct: 183 PIQAQSWPIAMQGRDIVAI 201
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 123 bits (296), Expect = 2e-28
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q RDLERG +IV+ATPGRL D LE +L++ +YLVLDEADRMLDMGFE
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+++I RQTLM++ATWPK V+ +
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + T
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 244 CVFG 255
C++G
Sbjct: 263 CLYG 266
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 506 ELAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
++A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEPG+K
Sbjct: 351 KIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKV 406
Query: 683 IIFVETKRKAENISRNI-RRYGWPAV 757
IIF TKR + ++RN+ R++G A+
Sbjct: 407 IIFCSTKRMCDQLTRNLTRQFGAAAI 432
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ WPIAM G+++V +
Sbjct: 183 PIQAQSWPIAMQGRDIVAI 201
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 122 bits (295), Expect = 2e-28
Identities = 56/90 (62%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q +++ERGV+IV+ATPGRL D LE +L + +YLVLDEADRMLDMGFE
Sbjct: 334 CLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFE 393
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+ ++ RQTLM++ATWPKEV+ +
Sbjct: 394 PQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 275 TGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISCA 333
Query: 244 CVFG 255
C++G
Sbjct: 334 CLYG 337
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = +2
Query: 452 TPRQTDFDVVSYLAQRSEELAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENK 628
T RQT ++ + ++A D L + Q+NIG++ +L AN +I Q +++ EK ++
Sbjct: 405 TKRQTLMYTATW-PKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSR 463
Query: 629 LNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNI-RRYGWPAV 757
L +L+ SQEPG+K IIF TKR + ++RN+ R +G A+
Sbjct: 464 LEQILR----SQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAI 503
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ WPIAM +++V +
Sbjct: 254 PIQAQSWPIAMQNRDIVAI 272
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 122 bits (294), Expect = 3e-28
Identities = 57/90 (63%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 CVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G APK Q ++LERG +IV+ATPGRL D LE + Q+ + LVLDEADRMLDMGFE
Sbjct: 540 CLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFE 599
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
PQIRKI+ +I P RQTLM++ATWPKEV+ +
Sbjct: 600 PQIRKIVNEIPPRRQTLMYTATWPKEVRKI 629
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S + T
Sbjct: 481 TGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISCT 539
Query: 244 CVFG 255
C++G
Sbjct: 540 CLYG 543
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 PRQTDFDVVSYLAQRSEELAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKL 631
PR+ + + ++A D L + +Q+NIG + +L+AN I Q V++ + EKE +L
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL 670
Query: 632 NVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY 742
+L+ SQE G+K IIF TKR ++++R++ R+
Sbjct: 671 EQILR----SQERGSKVIIFCSTKRLCDHLARSVGRH 703
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ WPIA+ +++V +
Sbjct: 460 PIQAQTWPIALQSRDIVAI 478
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 114 bits (275), Expect = 6e-26
Identities = 53/88 (60%), Positives = 67/88 (76%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 434
G K EQ ++L+ G EIV+ATPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R
Sbjct: 338 GMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVR 397
Query: 435 KIIEQIRPDRQTLMWSATWPKEVKNLLR 518
I+ QIRPDRQTL++SAT P +V+ L R
Sbjct: 398 SIVGQIRPDRQTLLFSATMPWKVEKLAR 425
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R +
Sbjct: 274 TGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVS 333
Query: 244 CVFGVLLKESK 276
V+G + K +
Sbjct: 334 AVYGGMSKHEQ 344
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 111 bits (267), Expect = 5e-25
Identities = 52/91 (57%), Positives = 71/91 (78%), Gaps = 3/91 (3%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEP 425
G+ +Q +L+RG EIV+ TPGR+ID L + TNL+R TYLV+DEADRM DMGFEP
Sbjct: 506 GSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEP 565
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
QI +I++ IRPDRQT+++SAT+P++V+ L R
Sbjct: 566 QITRIVQNIRPDRQTVLFSATFPRQVETLAR 596
Score = 71.3 bits (167), Expect = 7e-13
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 195
TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 442 TGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQAQ PI MSG++ +GV
Sbjct: 421 PIQAQALPIIMSGRDCIGV 439
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 111 bits (266), Expect = 7e-25
Identities = 54/94 (57%), Positives = 72/94 (76%), Gaps = 4/94 (4%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G P +Q R+LERGV+I++ATPGRL D LE+G +LQ +L LDEADRMLDMGFE
Sbjct: 257 VAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFE 316
Query: 423 PQIRKIIEQI-RPD---RQTLMWSATWPKEVKNL 512
PQIRKI++Q+ P RQT+++SAT+P+E++ L
Sbjct: 317 PQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRL 350
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 228
TGSGKT A+ P I I I R G P+A++L+PTRELA QI A F + +
Sbjct: 192 TGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQT 251
Query: 229 YVRNTCVFG 255
V+ +G
Sbjct: 252 GVKVVVAYG 260
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGA 676
+ LA D+L +YI + +G + S+ I+Q V+ + +K + L LL Q +Q A
Sbjct: 348 QRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQA 406
Query: 677 KTIIFVETKRKAENISRNIRRYGWPAVCI 763
T++FVETK+ A+++ + G+PA I
Sbjct: 407 LTLVFVETKKGADSLENWLCINGFPATTI 435
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 111 bits (266), Expect = 7e-25
Identities = 54/94 (57%), Positives = 71/94 (75%), Gaps = 4/94 (4%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G P +Q R+LERGV+I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFE
Sbjct: 270 VAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFE 329
Query: 423 PQIRKIIEQI----RPDRQTLMWSATWPKEVKNL 512
PQIRKI+EQ+ R RQTL++SAT+P+E++ L
Sbjct: 330 PQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRL 363
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 228
TGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F + +
Sbjct: 205 TGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQT 264
Query: 229 YVRNTCVFG 255
V+ +G
Sbjct: 265 GVKVVVAYG 273
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGA 676
+ LA D+L +YI + +G + S+ I+Q V+ + +K + L LL Q Q A
Sbjct: 361 QRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQA 419
Query: 677 KTIIFVETKRKAENISRNIRRYGWPAVCI 763
T++FVETKR A+++ + G+PA I
Sbjct: 420 LTLVFVETKRGADSLENWLCINGFPATSI 448
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 108 bits (260), Expect = 4e-24
Identities = 51/91 (56%), Positives = 71/91 (78%), Gaps = 3/91 (3%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEP 425
G+ +Q +L+RG EIV+ TPGR+ID L + TNL+R T+LV+DEADRM DMGFEP
Sbjct: 639 GSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEP 698
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
QI +II+ IRP+RQT+++SAT+P++V+ L R
Sbjct: 699 QITRIIQNIRPERQTVLFSATFPRQVETLAR 729
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 575 TGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCV 634
Query: 244 CVFG 255
V+G
Sbjct: 635 PVYG 638
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQ Q PI MSG++ +GV
Sbjct: 554 PIQTQALPIIMSGRDCIGV 572
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 106 bits (254), Expect = 2e-23
Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFE
Sbjct: 262 VAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFE 321
Query: 423 PQIRKIIEQI----RPDRQTLMWSATWPKEVKNL 512
PQIRKI+EQ+ R RQT+++SAT+P +++ L
Sbjct: 322 PQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/102 (31%), Positives = 56/102 (54%)
Frame = +2
Query: 458 RQTDFDVVSYLAQRSEELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 637
RQT ++ +Q + LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 339 RQTMLFSATFPSQ-IQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMD 396
Query: 638 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
LL ++Q+ + T++FVETKR A+ + + +PA I
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSI 438
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 228
TGSGKT A+ P I I + R G P A++L+PTRELA QI A F + +
Sbjct: 197 TGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT 256
Query: 229 YVRNTCVFG 255
V+ +G
Sbjct: 257 GVKVVVAYG 265
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 106 bits (254), Expect = 2e-23
Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 4/94 (4%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFE
Sbjct: 262 VAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFE 321
Query: 423 PQIRKIIEQI----RPDRQTLMWSATWPKEVKNL 512
PQIRKI+EQ+ R RQT+++SAT+P +++ L
Sbjct: 322 PQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/102 (31%), Positives = 56/102 (54%)
Frame = +2
Query: 458 RQTDFDVVSYLAQRSEELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 637
RQT ++ +Q + LA D++ +YI + +G + S+ I Q V+ QE +K + L
Sbjct: 339 RQTMLFSATFPSQ-IQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMD 396
Query: 638 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
LL ++Q+ + T++FVETKR A+ + + +PA I
Sbjct: 397 LLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSI 438
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 228
TGSGKT A+ P I I + R G P A++L+PTRELA QI A F + +
Sbjct: 197 TGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT 256
Query: 229 YVRNTCVFG 255
V+ +G
Sbjct: 257 GVKVVVAYG 265
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/92 (46%), Positives = 61/92 (66%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
+C+ G R Q ++RGV IV+ATPGRL D L K +L C YL LDEADR++D+GFE
Sbjct: 261 LCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFE 320
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
IR++ + + RQTL++SAT P +++ R
Sbjct: 321 DDIREVFDHFKSQRQTLLFSATMPTKIQIFAR 352
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 216
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQ QG P+ ++G++++G+
Sbjct: 171 PIQVQGLPVILAGRDMIGI 189
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
+C+ G R Q +++GV IV+ATPGRL D L K +L C L LDEADR++D+GFE
Sbjct: 212 LCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFE 271
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVK 506
IR + + + RQTL++SAT P +++
Sbjct: 272 DDIRHVFDHFKSQRQTLLFSATMPAKIQ 299
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 216
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQ QG P+ +SG++++G+
Sbjct: 122 PIQVQGLPVVLSGRDMIGI 140
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 89.4 bits (212), Expect = 2e-18
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 243 VCVWG-APKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
+CV+G + K Q + GV+IVI TPGRL D +E L +++VLDEADRMLDMGF
Sbjct: 223 ICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGF 282
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNL 512
E +R I+ RQ +M+SATWP +V L
Sbjct: 283 EEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/87 (32%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +2
Query: 506 ELAEDYLG-DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
+LA++++ + I++ IGS+ L+ANH+++QI+++ E ++ +L LL++ +SQ+ +
Sbjct: 312 KLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQK--NRV 369
Query: 683 IIFVETKRKAENISRNIRRYGWPAVCI 763
++F K +AE + R +++ GW AV I
Sbjct: 370 LVFALYKVEAERLERFLQQRGWKAVSI 396
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSY 231
TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 160 TGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCG 219
Query: 232 VRNTCVFG 255
+++ CV+G
Sbjct: 220 LKSICVYG 227
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 2 PIQAQGWPIAMSGKNLVGV 58
PIQ+ WP + G++L+G+
Sbjct: 139 PIQSHTWPFLLDGRDLIGI 157
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/93 (39%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Frame = +3
Query: 243 VCVWGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
+C++G P +Q R L+ GV++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 208 ICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGF 267
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
+ I+E++ RQ++M+SAT P +++L +
Sbjct: 268 AEDVEIILEKLPEKRQSMMFSATMPSWIRSLTK 300
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 201
R TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 86.2 bits (204), Expect = 2e-17
Identities = 35/93 (37%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Frame = +3
Query: 243 VCVWGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
+C++G P +Q R+L G+++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 220 ICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGF 279
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
+ I++++ RQ++M+SAT P +++L +
Sbjct: 280 AEDVEIILQKLPAKRQSMMFSATMPSWIRSLTK 312
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 201
R TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 85.4 bits (202), Expect = 4e-17
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +3
Query: 243 VCVWGAPKRE-QARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
VCV+G Q L RGV++V+ TPGR+ID +E + L YLVLDEAD+ML +GF
Sbjct: 210 VCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGF 269
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
E + I+E + RQ++++SAT P VK L R
Sbjct: 270 EEAVESILENLPTKRQSMLFSATMPTWVKKLAR 302
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 219
R TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 220 HTSYVRNTCVFG 255
Y+ CV+G
Sbjct: 203 SAPYLSTVCVYG 214
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
++LA YL + + I++ Q + + + + + +L ++ G KT
Sbjct: 298 KKLARKYLDNPLNIDLVGDQ---DEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKT 354
Query: 683 IIFVETKRKAENIS 724
I+F +TKR A+ +S
Sbjct: 355 IVFTQTKRDADEVS 368
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.0 bits (191), Expect = 8e-16
Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 17/107 (15%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 428
V G EQ + +G EIVIATPGRLID LE+ L +C Y+VLDEADRM+DMGFEPQ
Sbjct: 424 VGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ 483
Query: 429 IRKIIE-----QIRPD------------RQTLMWSATWPKEVKNLLR 518
+ +++ ++P+ R T M+SAT P V+ L R
Sbjct: 484 VAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLAR 530
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 234
TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 359 TGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGF 418
Query: 235 RNTCVFG 255
R T + G
Sbjct: 419 RVTSIVG 425
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +2
Query: 503 EELAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKT 682
E LA YL + + + IG+ + + I Q V + +E EK +L LL E+G+
Sbjct: 526 ERLARKYLRNPVVVTIGTAGKTTDL-ISQHVIMMKESEKFFRLQKLLDELGEKT-----A 579
Query: 683 IIFVETKRKAENISRNIRRYGW 748
I+FV TK+ ++I++N+ + G+
Sbjct: 580 IVFVNTKKNCDSIAKNLDKAGY 601
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/93 (40%), Positives = 51/93 (54%)
Frame = +3
Query: 240 HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
H CV G RE R L+ GV +V+ TPGR+ D L++ + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGF 198
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
+ QI I + + P Q ++SAT P E + R
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGVLLKESK 276
ALVLAPTRELAQQI++V G V+ + CV G ++E +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/89 (39%), Positives = 56/89 (62%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L + F+
Sbjct: 255 VTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQ 314
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVKN 509
P I ++I+ + RQ LM+SAT+P VK+
Sbjct: 315 PSIEELIQFLPESRQILMFSATFPVTVKS 343
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
R G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/112 (32%), Positives = 61/112 (54%)
Frame = +3
Query: 174 QRVSTTNSASCCRFWTHILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGT 353
+ ++ S C H+ V G ++ L + V +++ TPGR++D +KG
Sbjct: 209 RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGV 268
Query: 354 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKN 509
L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK+
Sbjct: 269 CVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKD 320
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 219
R G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/112 (32%), Positives = 61/112 (54%)
Frame = +3
Query: 174 QRVSTTNSASCCRFWTHILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGT 353
+ ++ S C H+ V G ++ L + V +++ TPGR++D +KG
Sbjct: 209 RELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGV 268
Query: 354 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKN 509
L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK+
Sbjct: 269 CVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKD 320
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 219
R G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/88 (38%), Positives = 55/88 (62%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+
Sbjct: 225 VTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQ 284
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVK 506
P + ++I+ + +RQ LM+SAT+P VK
Sbjct: 285 PSLEELIQFLPQNRQFLMFSATFPVTVK 312
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
R G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/88 (38%), Positives = 55/88 (62%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
V G R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+
Sbjct: 225 VTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQ 284
Query: 423 PQIRKIIEQIRPDRQTLMWSATWPKEVK 506
P + ++I+ + +RQ LM+SAT+P VK
Sbjct: 285 PSLEELIQFLPQNRQFLMFSATFPVTVK 312
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
R G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 74.5 bits (175), Expect = 7e-14
Identities = 38/93 (40%), Positives = 50/93 (53%)
Frame = +3
Query: 240 HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
H CV G RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 198
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
+ QI I + + P Q ++SAT P E + R
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGVLLKESK 276
ALVLAPTRELAQQI++V G V+ + CV G ++E +
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQ 151
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/93 (37%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEP 425
+ G ++ +A L +GV +++ATPGRL+D LE + + +LV+DEADR+L+ FE
Sbjct: 261 IGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEE 320
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLRIT 524
++KI+ + RQT ++SAT +V++L R++
Sbjct: 321 DLKKILNLLPKTRQTSLFSATQSAKVEDLARVS 353
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 200 TGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/88 (38%), Positives = 49/88 (55%)
Frame = +3
Query: 240 HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
H C+ G E R LE GV +V TPGR+ D +++ + + L+LDE+D ML GF
Sbjct: 135 HACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGF 194
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEV 503
+ QI + + PD Q + SAT P E+
Sbjct: 195 KDQIYDVYRYLPPDLQVCLVSATLPHEI 222
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 154 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFG 255
AL+L+PTRELA Q ++ G H + + C+ G
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGG 140
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 72.9 bits (171), Expect = 2e-13
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +3
Query: 216 WTHILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDE 392
+T I C + V G REQ L +IV+ATPGR+ID L + +L L+LDE
Sbjct: 264 FTDIKCG--LIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 321
Query: 393 ADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLRITWETTFR 542
ADR+L GF +I +++ RQT+++SAT +EVK L++++ R
Sbjct: 322 ADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLR 371
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCG 270
Query: 244 CVFGVL 261
+ G L
Sbjct: 271 LIVGGL 276
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Frame = +3
Query: 270 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 440
EQ R +I++ATPGRL D +E T L+ LVLDEAD +LDMGF I +I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 441 IEQIRPDRQTLMWSATWPKEVKNL 512
I + +RQT ++SAT P+EV+ +
Sbjct: 234 ISAVPKERQTFLFSATVPEEVRQI 257
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 192
K+ + TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 70.9 bits (166), Expect = 9e-13
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +3
Query: 270 EQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKI 440
EQ R +I++ATPGRL D +E + T L LVLDEAD +LDMGF I +I
Sbjct: 502 EQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERI 561
Query: 441 IEQIRPDRQTLMWSATWPKEVKNLLRI 521
I + RQT ++SAT P+EV+ + +
Sbjct: 562 IAAVPKQRQTFLFSATVPEEVRQICHV 588
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 192
K+ + TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEP 425
V G +Q +L +G +++IATPGRL+ L E L+ Y+V DEAD + MGF
Sbjct: 133 VGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAE 192
Query: 426 QIRKIIEQIRPDRQTLMWSATWP 494
Q+ +I+ Q+ +RQTL++SAT P
Sbjct: 193 QLHQILTQLSENRQTLLFSATLP 215
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R +
Sbjct: 74 TGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVS 130
Query: 244 CVFG 255
+ G
Sbjct: 131 LLVG 134
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/88 (38%), Positives = 49/88 (55%)
Frame = +3
Query: 240 HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 419
H C+ G E + LERGV V TPGR+ D +++G+ + LVLDE+D ML G
Sbjct: 122 HACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGL 181
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEV 503
+ QI + + D Q + SAT P+E+
Sbjct: 182 KDQIYDVYRALPHDIQVCLISATLPQEI 209
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 157 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGVLLKESKPGTWRG 294
LVL+P+RELA Q ++ G HT+ + C+ G + E RG
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERG 140
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 70.1 bits (164), Expect = 2e-12
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMG 416
V V G + +Q L + +++ATPGRL D + KG + L+ YLVLDEADR+L+
Sbjct: 122 VLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRLLNED 180
Query: 417 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
FE + +I+E+I +R+T ++SAT K+V+ L R
Sbjct: 181 FEKSLNQILEEIPLERKTFLFSATMTKKVRKLQR 214
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 201
TGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 55 TGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 70.1 bits (164), Expect = 2e-12
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEP 425
+ G +R +A+ + G +VIATPGRL+D L+ + + LV+DEADR+L+ FE
Sbjct: 196 IGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEE 255
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLRIT 524
+ KI++ + RQT ++SAT +VK+L R++
Sbjct: 256 DMNKILKILPKTRQTALFSATQTSKVKDLARVS 288
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 213
TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 135 TGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +3
Query: 246 CVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 425
CV G RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+
Sbjct: 143 CVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKD 202
Query: 426 QIRKIIEQIRPDRQTLMWSATWPKEVKNLLR 518
QI I + + Q ++SAT P E + R
Sbjct: 203 QIYDIFQLLPSKVQVGVFSATMPPEALEITR 233
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFGVLLKESK 276
ALVLAPTRELAQQI++V G V+ CV G ++E +
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQ 153
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Frame = +3
Query: 264 KREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIR 434
K +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD+GF +
Sbjct: 447 KLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVE 506
Query: 435 KIIEQIRPDRQTLMWSATWPKEVKNLLRI 521
KII+ + RQ+L++SAT PKEV+ + ++
Sbjct: 507 KIIDCLPRQRQSLLFSATIPKEVRRVSQL 535
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 195
+ TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = +3
Query: 246 CVWGAPKRE-QARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 422
C++G Q L+RGV+IV+ TPGR+ D +E+ + + VLDEAD ML MGF
Sbjct: 207 CLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFV 266
Query: 423 PQIRKIIEQIRPDR--QTLMWSATWPKEVKNL 512
+ I+ ++ QTL++SAT P VKN+
Sbjct: 267 EDVELILGKVEDSTKVQTLLFSATLPSWVKNI 298
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 219
R TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 220 HTSYVRNTCVFG 255
+ + + C++G
Sbjct: 199 GSLGLSSCCLYG 210
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +3
Query: 270 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 440
+Q R +I+IATPGRL+D +E T+ L ++DEAD +LD+GF+ + KI
Sbjct: 496 DQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKI 555
Query: 441 IEQIRPDRQTLMWSATWPKEVKNLLRI 521
I+ + RQ+L++SAT PKEV+ + ++
Sbjct: 556 IDCLPRQRQSLLFSATIPKEVRRVSQL 582
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 55 RTTTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 195
+ TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 428
V G P Q +++GVE++I TPGR++D L K T L VLDE D ML GF Q
Sbjct: 221 VGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQ 280
Query: 429 IRKIIEQIRPDRQTLMWSATWPKEVKNL 512
+ +I + + Q L++SAT +EV+ +
Sbjct: 281 VMQIFQAL-SQPQVLLFSATISREVEKV 307
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 234
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 235 RNTCVFG 255
+ V G
Sbjct: 216 KTALVVG 222
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 428
V G P Q +++GVE++I TPGR++D L K T L VLDE D ML GF Q
Sbjct: 84 VGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQ 143
Query: 429 IRKIIEQIRPDRQTLMWSATWPKEVKNL 512
+ +I + + Q L++SAT +EV+ +
Sbjct: 144 VMQIFQAL-SQPQVLLFSATISREVEKV 170
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 234
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 235 RNTCVFG 255
+ V G
Sbjct: 79 KTALVVG 85
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 66.5 bits (155), Expect = 2e-11
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +3
Query: 270 EQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKI 440
EQ R + +I++ATPGRL D ++ + T L LVLDEAD +LDMGF +I +I
Sbjct: 200 EQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI 259
Query: 441 IEQIRPDRQTLMWSATWPKEVKNLLRI 521
I + RQT ++SAT EV+ + +
Sbjct: 260 IAAVPKQRQTFLFSATVSDEVRQICHV 286
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 192
K+ + TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +3
Query: 297 VEIVIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 470
+ I++ PGRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQT
Sbjct: 194 MNILVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQT 252
Query: 471 LMWSATWPKEVKNLLRIT 524
L++SAT K+VK+L R++
Sbjct: 253 LLFSATQTKKVKDLARLS 270
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 192
TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 117 TGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 ERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 464
E G ++I TPGRL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R
Sbjct: 140 EEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR 199
Query: 465 QTLMWSATWPKEVKNLLR 518
+T ++SAT + V+ L +
Sbjct: 200 RTGLFSATQTEGVEELAK 217
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +1
Query: 37 WKEFSWRTTTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 207
+K+ + TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 208 ADFGHT 225
F T
Sbjct: 111 QPFVST 116
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 464
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R
Sbjct: 140 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 199
Query: 465 QTLMWSATWPKEVKNLLR 518
+T ++SAT + V +L +
Sbjct: 200 RTGLFSATQTQAVADLAK 217
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 225
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 464
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR 192
Query: 465 QTLMWSATWPKEVKNLLR 518
+T ++SAT + V +L +
Sbjct: 193 RTGLFSATQTQAVADLAK 210
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 207
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 63.3 bits (147), Expect = 2e-10
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Frame = +3
Query: 222 HILCS*HVCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVLDE 392
++ CS V V G Q L IVI TPGR+ LE R +LVLDE
Sbjct: 154 NLRCS--VIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDE 211
Query: 393 ADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKNLL 515
ADR+LD+GF+ ++R I + + RQTL++SAT ++ LL
Sbjct: 212 ADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALL 252
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 243
TGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R +
Sbjct: 104 TGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCS 158
Query: 244 CVFG 255
+ G
Sbjct: 159 VIVG 162
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIR 434
G+ R Q L +++V+ TPGR++ +E+G YLVLDEAD M D GF P+IR
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIR 285
Query: 435 KII 443
K +
Sbjct: 286 KFL 288
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTS 228
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA 216
Query: 229 YVRNTCVFG 255
R+ V G
Sbjct: 217 RFRSILVSG 225
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 243 VCVWGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGF 419
V G +R Q +LE+GV+++IATPGR + +G L +LDE D + D F
Sbjct: 485 VVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEF 544
Query: 420 EPQIRKIIEQIRPDRQTLMWSATWPKEVKNLL 515
E ++ +I Q L +AT P E+ N L
Sbjct: 545 EAALQNLINSSPVTAQYLFVTATLPLEIYNKL 576
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 195
+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 420 SGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 620 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR 739
+NK LLQ + + P +KTIIF +ET RK ENI + + R
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDR 660
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQI 431
G K ++ L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+ +I
Sbjct: 142 GEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEI 201
Query: 432 RKIIE 446
+II+
Sbjct: 202 EQIIK 206
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 222
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.4 bits (115), Expect = 1e-06
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVE-IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 425
V GA + Q L++ IV+ TPGR+ + + G + C +LVLDE D +L F
Sbjct: 227 VGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRE 286
Query: 426 QIRKIIEQI--------------RPDRQTLMWSATWPKEV 503
I +I+E + R +RQT++ SAT P V
Sbjct: 287 DIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSV 326
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 195
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 479
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 480 SATWPKEVK 506
SAT KE++
Sbjct: 229 SATLSKEIR 237
Score = 34.3 bits (75), Expect = 0.095
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +2
Query: 467 DFDVVSYLAQRSEEL---AEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 637
D V+ + A S+E+ + ++ D ++I + H ++Q E EK KLN
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLND 281
Query: 638 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
LL + +Q +IFV++ +A +++ + +P++CI
Sbjct: 282 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICI 318
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 195
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 92 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 479
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 145
Query: 480 SATWPKEVK 506
SAT KE++
Sbjct: 146 SATLSKEIR 154
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +2
Query: 467 DFDVVSYLAQRSEEL---AEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 637
D V+ + A S+E+ + ++ D ++I + H ++Q E EK KLN
Sbjct: 139 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 198
Query: 638 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
LL + +Q +IFV++ +A +++ + +P++CI
Sbjct: 199 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICI 235
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 195
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 9 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMW 479
IV+ TPGR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228
Query: 480 SATWPKEVK 506
SAT KE++
Sbjct: 229 SATLSKEIR 237
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +2
Query: 467 DFDVVSYLAQRSEEL---AEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 637
D V+ + A S+E+ + ++ D ++I + H ++Q E EK KLN
Sbjct: 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLND 281
Query: 638 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCI 763
LL + +Q +IFV++ +A +++ + +P++CI
Sbjct: 282 LLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICI 318
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 195
+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 92 SGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +3
Query: 249 VWGAPKREQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMGF 419
V G +Q R L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G
Sbjct: 314 VGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGH 373
Query: 420 EPQIRKIIE 446
+++ I++
Sbjct: 374 FRELQSILD 382
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Frame = +1
Query: 28 SYVWKEFSWRTTTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 162
+Y K+ TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 163 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGVLLKESK 276
+ PTRELA Q+ + + V+ + G + E +
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQ 322
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +3
Query: 276 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 449
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + +++
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQL 217
Query: 450 IRPDRQTLMWSAT 488
+ +L S T
Sbjct: 218 TQTSDDSLFPSFT 230
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 204
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 40 KEFSWRTTTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 195
K+ R TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +3
Query: 300 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 467
EI+++TP + G T + + LVLDEAD +L G+E +R + I Q
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQ 233
Query: 468 TLMWSATWPKEVKNLLRI 521
L+ SAT +V+ L ++
Sbjct: 234 CLLMSATTSSDVEKLKKL 251
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +3
Query: 255 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEP-- 425
GAP + + +VI TPG L ++ L LV DEAD ML GF
Sbjct: 203 GAPAATRGAPVS--AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDS 260
Query: 426 -QIRKIIEQIRPDRQTLMWSATWPKEVKNLLRIT 524
+I K I ++ P+ Q L++SAT+ + VK+ + T
Sbjct: 261 LKIMKDIGRVNPNFQVLLFSATFNETVKDFVART 294
Score = 34.3 bits (75), Expect = 0.095
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 67 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 219
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 300 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLM 476
+++I+TP RL ++ +L + YLVLDE+D++ + QI +++ P +
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSL 319
Query: 477 WSATWPKEVKNLLRITWETTFRSI*DHYNFPQITTFFKL 593
+SAT P V+ L R R I N T KL
Sbjct: 320 FSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKL 358
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 192
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +3
Query: 288 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 455
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266
Query: 456 PDRQ 467
D +
Sbjct: 267 FDEK 270
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 GAPKREQARDLER-GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 431
GAP Q L+ E ++ATP RL++ + ++ + LV+DE + G+ +
Sbjct: 232 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 291
Query: 432 RKIIEQIRPDRQTLMWSATWPKEV 503
+ I + I QT++++ ++ +
Sbjct: 292 KSIKQAISSKHQTIVFNNSFSASI 315
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +1
Query: 64 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 207
TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 122 TGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 10 SSRLADSYVWKEFSWRTTTGSGKTLAYILPA 102
+ R+ Y WK + WRT+ K AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
>At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to
beta-1,3-glucanase-like protein (GI:14279169) [Olea
europaea] similar to Glucan endo-1,3-beta-glucosidase
precursor (EC 3.2.1.39) ((1-3)-beta- glucan
endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-
endoglucanase) (Swiss-Prot:P52409) [Triticum aestivum]
Length = 197
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 320 WSSNDYFYSPLQVPGLLSFRSTPNTH 243
W+ N YF + QVPG +F T T+
Sbjct: 68 WAVNSYFQNAAQVPGSCNFSGTATTN 93
>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 366
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -1
Query: 141 TSPNRRLVVYVHN----GWQDVGQRFAGTRCG 58
T +++L+ Y+H+ GW+D+ Q+ RCG
Sbjct: 19 TEEDKKLISYIHDHGEGGWRDIPQKAGLKRCG 50
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 464
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 464
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 194 ICCANSLVGAKTKAIGPSPLRI 129
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At3g10350.1 68416.m01241 anion-transporting ATPase family protein
similar to SP|O43681 Arsenical pump-driving ATPase (EC
3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
(ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
Anion-transporting ATPase; contains non-consensus GA
donor splice site at intron 5
Length = 411
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 7 SSSRLADSYVWKEFSWRTTTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 186
S++ L + FS RTT S T +LPAI+ ++ + RR + V +PT ++
Sbjct: 20 SATSLVSGIDFISFSPRTTLSSSST---VLPAILSLSVKHNRRRNSLQVKSVASPTETIS 76
Query: 187 QQIQQVA 207
+ + V+
Sbjct: 77 EFDEMVS 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,796
Number of Sequences: 28952
Number of extensions: 394318
Number of successful extensions: 1367
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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