Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0107
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   5.0  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   5.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.7  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 283 QQKRQVSLQVITNAVCARTYGNSVIIGSTLCV 378
           ++ R V ++ ITNA C + Y   VI G+ L +
Sbjct: 461 KRSRLVYIEKITNAACYQEYSAIVINGTALAI 492


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 498 ERLPAGSLESHLSTPGS 548
           +RLP+ S ESH++TP S
Sbjct: 110 DRLPSDSSESHVATPSS 126


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 71  HQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNI 181
           H  H  +V    S +MNN N D  +   NH G +N +
Sbjct: 514 HNNHNGNVRNLHSGSMNNYNTDSLL---NHTGGHNEV 547


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 589 NHSAFVSRHLNSSPDP 542
           +HS+ + R+LN+ PDP
Sbjct: 436 DHSSIIQRYLNAHPDP 451


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 190  QPSQWKQQLCWYLGLGCR 243
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,415
Number of Sequences: 5004
Number of extensions: 29391
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)