Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0107
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0236 - 1725061-1727070                                           30   1.7  
02_04_0266 - 21415912-21418563                                         29   2.9  
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105...    29   3.9  
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630...    28   5.1  
12_02_0543 + 20178096-20178500                                         28   6.8  

>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 59  LLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 178
           L +++ G+TS+ H+        LNND+  IN NHVG + N
Sbjct: 131 LNKKNNGNTSN-HIFAVELDTVLNNDMQDINDNHVGIDIN 169


>02_04_0266 - 21415912-21418563
          Length = 883

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 178 HPAHQPSQWKQQLCWYLGLGCRLREDSDAASGANN 282
           H  +   +W Q   W +  GCR +ED+  A G  N
Sbjct: 548 HRVYWNREWHQHQPWKMPTGCREQEDNPFAVGNKN 582


>07_03_0587 +
           19708841-19709282,19709693-19709883,19710429-19710568,
           19710955-19711380,19711540-19712685,19712805-19712934,
           19713257-19713492,19713575-19713710,19713793-19713869,
           19714692-19714798,19714896-19714996
          Length = 1043

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = +1

Query: 223 YLGL--GCRLREDSDAASGANNQQK--RQVSLQVITNAVCARTYGNSVIIGSTLCVSGAN 390
           YLG+  GC +RE S   +  N + K    VS+  ++  +C R+  +SVII   L + G  
Sbjct: 511 YLGILGGCPIRESSQEIALLNLKHKIWFYVSIPSLSQCLCVRS--SSVIIDDDLVIVG-- 566

Query: 391 GRSTC 405
           G ++C
Sbjct: 567 GGASC 571


>03_06_0341 -
           33261210-33261327,33261411-33262057,33262950-33263061,
           33263313-33264097,33264797-33264867,33266323-33266635
          Length = 681

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 169 QQQHPAHQPSQWKQQLCWYLGLGCRLREDSDAASGANNQQKRQVSLQVITNAVCAR 336
           QQQ P     Q +QQL    G   +L +    + G N Q  +Q+++    NA  A+
Sbjct: 566 QQQQPQQLQQQHQQQLAMSGGQNAQLAQQLAMSGGQNAQLAQQLAMSGGQNAQLAQ 621


>12_02_0543 + 20178096-20178500
          Length = 134

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 101 AGGHWRCDPGAAGEDVSCTKSEG 33
           A G WR   G+AGE+   T S+G
Sbjct: 71  ASGGWRLGAGSAGEETGVTGSDG 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,956
Number of Sequences: 37544
Number of extensions: 236074
Number of successful extensions: 933
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)