Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0107
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 30 1.3
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 30 1.3
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 29 3.0
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 4.0
SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7) 29 4.0
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 28 5.2
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029) 28 6.9
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 28 6.9
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 6.9
SB_13278| Best HMM Match : zf-CHC2 (HMM E-Value=6.8) 27 9.1
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 258 RCCFGSQQPTKTPSEPPGHHQRRLRPHVRKLCDHWLH 368
+ C S P T PP H LRP R D LH
Sbjct: 708 QACASSSIPFSTTKHPPVHRYHSLRPSTRLFIDTILH 744
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 56 HLLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINL 196
H ++ H H H + +NN N IIN+N++ NNNI N+
Sbjct: 373 HYQQQQYHHQQQQHHHQNIIINNNN---IIINNNNIIINNNINNNNI 416
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 119 NNLNNDVAIINHNHVG-FNNNIQRINL 196
NN+NN+ IIN+N++ NNNI IN+
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININI 435
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 59 LLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 193
L RRH + ++ + + + N NN NN+ N+N+ NNN IN
Sbjct: 217 LFRRHGFNNNNNNNNNNNNKNNNNNNTT-TNNNNTTTNNNNNNIN 260
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 80 HTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 193
H +++ + N NN NN++ IN+N+ NNNI N
Sbjct: 87 HHHHNNINNNNNNNNNNNNINNINNNNNNNNNNINNNN 124
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 71 HQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 178
++ + +S++ + N N++NN+ + IN+N+ NNN
Sbjct: 1758 NRNNNNSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Frame = +1
Query: 217 CWYLGLGCRLREDSDAASGANNQQKRQVSLQVITNAVCARTYGNSVIIGSTLCVSGA--N 390
CW G G ++ DS SG +Q + + ++ C R YG+ + + LC A N
Sbjct: 68 CWLTGWGRQV--DS---SGPLPDILQQARIPIASHEDCKRKYGSGIYSYTHLCAGEAKPN 122
Query: 391 GRSTCXXXXXXXXXXXXXXXRQLIGITSFGS 483
C L G+ SFG+
Sbjct: 123 AAGACQGDSGGPLVCERNGQWTLYGVVSFGA 153
>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 908
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 264 CFGSQQPTKTPSEPP--GHHQRRLRPHVRK-LCDHWLHPLC 377
C SQ P S+ P H Q L H + LCDH +PLC
Sbjct: 779 CDHSQDPLYDHSQNPLCDHSQNPLYDHSQNPLCDHSQNPLC 819
>SB_52967| Best HMM Match : zf-CCCH (HMM E-Value=4.7)
Length = 226
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 264 CFGSQQPTKTPSEPP--GHHQRRLRPHVRK-LCDHWLHPLC 377
C SQ P S+ P H Q L H + LCDH +PLC
Sbjct: 97 CDHSQDPLYDHSQNPLCDHSQNPLYDHSQNPLCDHSQNPLC 137
>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 56 HLLRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 178
H++RR H+ + + + + N NN NN+ N+N+ NNN
Sbjct: 249 HVMRRAVSHSYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 289
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 107 SYNMNNLNNDVAIINHNHVGFNNN 178
S N NN+NN++ I N+N+ NNN
Sbjct: 126 SDNNNNINNNIIINNNNNNDENNN 149
>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
Length = 610
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 163 WLQQQHPAHQPSQWKQQLCWYLGLGCRLR 249
W+ + HP H+ ++LC+ +G C R
Sbjct: 457 WMNESHPRHEDGIVSRRLCYRVGGDCCAR 485
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 113 NMNNLNNDVAIINHNHVGFNNN 178
N NN+NN+ I N+N++ NNN
Sbjct: 238 NNNNINNNNNINNNNNINNNNN 259
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 95 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQR 187
H +G NN NN+ IIN+N+ NNI++
Sbjct: 24 HNNGHNITNNNNNNNIIINNNNDNSKNNIKK 54
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 613 NEIILLLKNHSAFVSRHLNSSPDPGVERCDSSEPAGSLSGS 491
NE+ LL+ HS F++R ++ D ER + A G+
Sbjct: 342 NELFLLVDQHSKFLTRGYQAAIDAKKERASKGKDAYGAKGA 382
>SB_13278| Best HMM Match : zf-CHC2 (HMM E-Value=6.8)
Length = 152
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 62 LRRHQGHTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 178
L+RH + ++ + + + N NN NN+ N+N+ NNN
Sbjct: 71 LKRHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,280
Number of Sequences: 59808
Number of extensions: 257208
Number of successful extensions: 1927
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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