Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0105
(502 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 201 8e-51
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 127 2e-28
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 113 3e-24
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 99 6e-20
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 96 5e-19
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 94 1e-18
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 93 4e-18
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 91 1e-17
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 91 2e-17
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 89 7e-17
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 88 9e-17
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 87 2e-16
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 85 6e-16
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 85 8e-16
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 85 1e-15
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 84 2e-15
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 79 7e-14
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 70 3e-11
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 68 1e-10
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 61 1e-08
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 60 2e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 56 6e-07
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 47 2e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 38 0.096
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.13
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 38 0.17
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 38 0.17
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 38 0.17
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.17
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 37 0.22
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 37 0.22
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.39
UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep: CG1123... 36 0.51
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 36 0.68
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 36 0.68
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 36 0.68
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 35 1.2
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 35 1.2
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 1.2
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 35 1.2
UniRef50_A0EEB7 Cluster: Chromosome undetermined scaffold_91, wh... 35 1.2
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 35 1.2
UniRef50_Q16RQ9 Cluster: Putative uncharacterized protein; n=1; ... 34 1.6
UniRef50_UPI0000383240 Cluster: COG2202: FOG: PAS/PAC domain; n=... 34 2.1
UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1; ... 34 2.1
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 34 2.1
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 34 2.1
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 34 2.1
UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membra... 33 2.7
UniRef50_Q0S3K5 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 33 3.6
UniRef50_A3M092 Cluster: Predicted protein; n=4; Saccharomycetal... 33 3.6
UniRef50_Q6AXL3 Cluster: Leucine-rich repeat-containing protein ... 33 3.6
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 33 3.6
UniRef50_Q5DEX1 Cluster: SJCHGC09333 protein; n=1; Schistosoma j... 33 4.8
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 33 4.8
UniRef50_P27929 Cluster: 37S ribosomal protein NAM9, mitochondri... 33 4.8
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 32 6.3
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 8.3
UniRef50_A5K1R5 Cluster: Coatomer alpha subunit, putative; n=1; ... 32 8.3
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 32 8.3
UniRef50_Q6CF39 Cluster: Yarrowia lipolytica chromosome B of str... 32 8.3
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 32 8.3
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 201 bits (490), Expect = 8e-51
Identities = 101/142 (71%), Positives = 113/142 (79%)
Frame = +1
Query: 37 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEG 216
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRK +
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 217 PQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHAR 396
P+ + LVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 397 ILIRQRHIRVRKQVVQHPMHLL 462
+LIRQRHIRVRKQVV P ++
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFIV 149
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 127 bits (306), Expect = 2e-28
Identities = 63/140 (45%), Positives = 90/140 (64%)
Frame = +1
Query: 43 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGPQ 222
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R + + P+
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 223 EIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARIL 402
++ L +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 403 IRQRHIRVRKQVVQHPMHLL 462
IR + I+V KQVV P L+
Sbjct: 129 IRGKMIKVGKQVVDVPSFLV 148
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 113 bits (271), Expect = 3e-24
Identities = 64/127 (50%), Positives = 80/127 (62%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGP 219
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ L K +PR
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQELLTLDEK------NPRRIFE 63
Query: 220 QEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARI 399
E + R + R G+L E Q KLDYVL L +E+FL+ RLQT VFK+G KSIHH +
Sbjct: 64 GEALLR-----HMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 400 LIRQRHI 420
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 98.7 bits (235), Expect = 6e-20
Identities = 58/142 (40%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGE-G 216
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ R E G
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLISDRTEQG 67
Query: 217 PQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHAR 396
+E V+ L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 68 AKEAVQL---FNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQAR 124
Query: 397 ILIRQRHIRVRKQVVQHPMHLL 462
LI HI V +VV P +++
Sbjct: 125 QLIVHGHIAVNGRVVTAPSYMV 146
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 95.9 bits (228), Expect = 5e-19
Identities = 60/149 (40%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRG 210
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RK +
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 211 EGPQEI-VRR*CPST--SLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKS 381
G ++ V R SL R G+L E +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
Query: 382 IHHARILIRQRHIRVRKQVVQHPMHLLCA 468
AR I HI + + V P + + A
Sbjct: 123 PKQARQFITHGHIAIGGRRVTIPGYTVSA 151
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 94.3 bits (224), Expect = 1e-18
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Frame = +1
Query: 43 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRK-----VCS*APHPR 207
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ + S P
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 208 GEGPQEIVRR*CPSTSLVRIGVLDEKQMK--LDYVLGLKIEDFLERRLQTQVFKSGLAKS 381
+ ++RR L I + D++++ L+ VL L I +LERRLQ +VF +GLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 382 IHHARILIRQRHIRVRKQVVQHP 450
+HHAR+LI R I ++ Q+V P
Sbjct: 127 VHHARLLIGGRCISIKDQIVDVP 149
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 92.7 bits (220), Expect = 4e-18
Identities = 56/147 (38%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRG 210
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RK
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 211 EGPQEIVRR*CPS---TSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKS 381
+ V S + + R G+L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
Query: 382 IHHARILIRQRHIRVRKQVVQHPMHLL 462
AR L+ HI + + V P +L+
Sbjct: 123 PKQARQLVTHGHIAIGGRRVTVPGYLV 149
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 91.5 bits (217), Expect = 1e-17
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Frame = +1
Query: 61 PRRPFEKARLDQELKIIGEYGLRNKREVW----RVKYTLARIRKVCS*APHPRGEGPQEI 228
P++ + K L +EL+++GEYGLRNK+E+W R+K+ R R + S R P E+
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERA--PLEM 73
Query: 229 VRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIR 408
+ L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 PFK----EKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIV 129
Query: 409 QRHIRVRKQVVQHPMHLL 462
H+ V + V P L+
Sbjct: 130 HGHVAVAGRRVTSPGFLV 147
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 90.6 bits (215), Expect = 2e-17
Identities = 46/141 (32%), Positives = 82/141 (58%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGP 219
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RKV + + +
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 220 QEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARI 399
+ + + ++ L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 400 LIRQRHIRVRKQVVQHPMHLL 462
LI +HI+V+ Q+V P L+
Sbjct: 130 LIMHKHIQVKNQIVNKPSFLV 150
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 88.6 bits (210), Expect = 7e-17
Identities = 59/143 (41%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR---KVCS*APH 201
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR +
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 202 PRGEGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKS 381
Q+ + R L R +L +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLER--MIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALS 120
Query: 382 IHHARILIRQRHIRVRKQVVQHP 450
AR LI HI V + V P
Sbjct: 121 EKQARQLITHGHITVNGRRVTVP 143
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 88.2 bits (209), Expect = 9e-17
Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR----KVCS*AP 198
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R + + P
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 199 HPRGEGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAK 378
R ++++++ L R+G++++ LD +LGL E++LERRLQT V+K GLA+
Sbjct: 64 AERSTREKQLIQK------LYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLAR 117
Query: 379 SIHHARILIRQRHIRVRKQVVQHPMHLL 462
+I+ AR LI HI + + V P +++
Sbjct: 118 TIYQARQLIVHGHIAIGGRRVTSPGYIV 145
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 87.0 bits (206), Expect = 2e-16
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVC-S*APHPR 207
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 208 GEGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIH 387
+G +E V+ L R G+L ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEKEAVQL---FGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPK 120
Query: 388 HARILIRQRHIRVRKQVVQHPMHLL 462
AR I HI V + + P +L+
Sbjct: 121 QARQFIVHGHIAVNGKKINAPSYLV 145
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 85.4 bits (202), Expect = 6e-16
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Frame = +1
Query: 28 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPR 207
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLLGQT 62
Query: 208 GE-GPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSI 384
G +E V R L RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 63 GTVSGEEFVAR------LQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTM 115
Query: 385 HHARILIRQRHIRVRKQVVQHPMH 456
AR + H+ V V P +
Sbjct: 116 GQARQFVSHGHVTVDGSRVTEPSY 139
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 85.0 bits (201), Expect = 8e-16
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTL----ARIRKVCS*AP 198
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L + RK+ +
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 199 HPRGEGPQE---IVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSG 369
EG E + + L+R G++ + +D +L LK E+ LERRLQTQV + G
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
Query: 370 LAKSIHHARILIRQRHIRV 426
LA+++ AR I HI +
Sbjct: 123 LARTVIQARQFITHGHIAI 141
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 84.6 bits (200), Expect = 1e-15
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Frame = +1
Query: 61 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGPQEIVR-R 237
P P++K RL E +++ EYGL+NKRE+W + T+AR + + + + Q+I +
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 238 *CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRH 417
T L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I H
Sbjct: 70 ERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGH 128
Query: 418 IRVRKQVVQHPMHLL 462
I V +VV P +L+
Sbjct: 129 IMVNGEVVDAPSYLV 143
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 83.8 bits (198), Expect = 2e-15
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRK-------VCS 189
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R V S
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 190 *APHPRGE----GPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 357
P Q IV++ L +G+L E KL+ VL LK++D +ERRLQT +
Sbjct: 64 AGNLPEDSHYIRDAQNIVKK------LQTLGILKE-DAKLEDVLALKVDDIMERRLQTII 116
Query: 358 FKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
++ G A SI AR I HI + + + P +L+
Sbjct: 117 YRKGFANSIKQARQFIVHGHISLNGRKITVPGYLV 151
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 78.6 bits (185), Expect = 7e-14
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Frame = +1
Query: 46 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRK----VCS*APHPRGE 213
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ + R +
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDERAD 68
Query: 214 GPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHA 393
+E++ LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + A
Sbjct: 69 KEKELLDH------LVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEA 121
Query: 394 RILIRQRHIRVRKQVVQHPMHLL 462
R+ + HI + + + P HL+
Sbjct: 122 RLFVVHGHITLNGKKINAPGHLV 144
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 69.7 bits (163), Expect = 3e-11
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRG 210
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R A
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQ---ARSLLA 60
Query: 211 EGPQEIVRR*CP--STSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSI 384
G QE+ R P SL RIG++ K LD VL L++ D L RRLQT V K +
Sbjct: 61 LG-QEVRERKEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTP 118
Query: 385 HHARILIRQRHIRVRKQVVQHPMH 456
+ AR + HI + +VV P +
Sbjct: 119 YQARQAVVHGHITISDRVVTIPSY 142
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 67.7 bits (158), Expect = 1e-10
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Frame = +1
Query: 46 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR---KVCS*APHPRGEG 216
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R +V
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDTS 68
Query: 217 PQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHAR 396
+ I R +V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR
Sbjct: 69 DKIIAR-------MVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQAR 120
Query: 397 ILIRQRHIRVRKQVVQHPMHLL 462
LI I V + V P +++
Sbjct: 121 QLITHGFIAVNMKRVSIPGYMV 142
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 61.3 bits (142), Expect = 1e-08
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Frame = +1
Query: 139 EVWRVKYTLARIRKVCS*APHPRGE-GPQEIVRR*CPSTSLVRIGVLDEKQMK------L 297
EVWRVK+TL +IRK E P+ + LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 298 DYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVV 441
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVV 147
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 60.5 bits (140), Expect = 2e-08
Identities = 39/131 (29%), Positives = 70/131 (53%)
Frame = -2
Query: 438 NLLADTNMPLPDQNSGMMDGLRQARFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTN 259
+LL ++N+ L DQ+S +++ L Q + L LQ++ QE+ NLQ++ II+ L F Q +N++
Sbjct: 52 DLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSH 111
Query: 258 QRRRRALPSNNLLGSFSSRVRSSRADLTDTSERVFDAPYFTLVAETVLSDDLQLLVKTCL 79
Q +++ L + +D + ++ F+LV +TV + LQ V+T
Sbjct: 112 QSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSLVLQTVFTSQLQFGVQTSG 171
Query: 78 FKRTTRCHVRL 46
F R+ V L
Sbjct: 172 FVRSLWSRVSL 182
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 55.6 bits (128), Expect = 6e-07
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 277 DEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSI 384
D ++ KLDYVL L +E+FLERRLQT VFKSG+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +1
Query: 40 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS 189
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K S
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFS 168
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 47.2 bits (107), Expect = 2e-04
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Frame = +1
Query: 109 IGEYGLRNKREVWRVKYTLARIRKVCS*APH-PRGEGPQ-EIVRR*CPSTSLVRIGVLDE 282
+ +YG+ ++RE+ + T+ +IR + P+ + E+ RR S L +GV+D
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRR--LSRILYDMGVVDN 89
Query: 283 KQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHP-MHL 459
Q LD + L L RRL + K + + I ++Q H+RV VV +P +H+
Sbjct: 90 AQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
Query: 460 LCAWTLASTWTDCS 501
TWT+ S
Sbjct: 150 TRGHEDFVTWTNNS 163
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 38.3 bits (85), Expect = 0.096
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 271 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRV 426
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAV 117
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 37.9 bits (84), Expect = 0.13
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Frame = +1
Query: 97 ELKIIGEYGLRNKREVWRVKYTLAR-IRKVCS*APHPRGEGPQEIVRR*CPSTSLVRIGV 273
E+KI+ Y ++ KRE + L+R IR++ + + P L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 274 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPM 453
+ K L+ + F RRL + ++ +++++ HA +I H+RV VV+ P
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 454 HLLCAWTLAS--TWTDCS 501
L+ TL TW D S
Sbjct: 147 FLV-PRTLEDFVTWVDGS 163
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 37.5 bits (83), Expect = 0.17
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 304 VLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
+ G + F+E RL V++ G+A + AR L+ RHI V Q+V P L
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSFTL 134
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 37.5 bits (83), Expect = 0.17
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Frame = +1
Query: 109 IGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGPQEIVRR*CPSTSLVRIGVLDEKQ 288
I +YGLR++ E + + ++RK+ + P L +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 289 MKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLLC- 465
KL + + F ERRL + + + S A + H+R+ +VV P ++
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTIISK 149
Query: 466 AWTLASTWTDCS 501
A +W D S
Sbjct: 150 AMEDFVSWVDKS 161
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 37.5 bits (83), Expect = 0.17
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 307 LGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQV 438
+G + LERRL ++++G SI+ AR+L+ +H+ V ++
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKI 166
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 37.5 bits (83), Expect = 0.17
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +1
Query: 283 KQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHL 459
K K+ G + FLE RL VF+ +A +I AR LI HIRV + V P ++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYM 150
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 37.1 bits (82), Expect = 0.22
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 304 VLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMH 456
V G + LERRL VF++G A S AR ++R +HI + + V P +
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY 138
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 37.1 bits (82), Expect = 0.22
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHP 450
G + LERRL VF++G A ++ AR L+ RH+R+ + V P
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIP 131
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 36.3 bits (80), Expect = 0.39
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 283 KQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + V P +L+
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 463 CA 468
A
Sbjct: 113 KA 114
>UniRef50_Q9VNR6 Cluster: CG11238-PA; n=2; Sophophora|Rep:
CG11238-PA - Drosophila melanogaster (Fruit fly)
Length = 585
Score = 35.9 bits (79), Expect = 0.51
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 408 PDQNSGMMDGLRQARFEHLRLQTTLQEV---LNLQTKHIIEFHLFFIQYSNTNQRRRRAL 238
P + G + L R E+ RLQ LQE LNLQT+ EF +Q S T++RR
Sbjct: 408 PQEAEGTLQ-LSTLRQENERLQRELQEARAELNLQTRRASEFEQQLLQLSETSRRREALA 466
Query: 237 PSNN 226
+ N
Sbjct: 467 TTTN 470
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.5 bits (78), Expect = 0.68
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMH 456
G + LE RL +F+ G+A +I AR L+ RHI + V P +
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 35.5 bits (78), Expect = 0.68
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 292 KLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHP 450
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V P
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIP 247
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 35.5 bits (78), Expect = 0.68
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
+ERRL +F+S A+++ AR + Q H+++ QV+++P +L
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 34.7 bits (76), Expect = 1.2
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +1
Query: 256 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQ 435
L +GV+ + L + + DF RRL V + + A LI+Q HI+V
Sbjct: 82 LYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPD 141
Query: 436 VVQHPMHLL 462
V+++P +++
Sbjct: 142 VIRNPAYIV 150
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 34.7 bits (76), Expect = 1.2
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 274 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPM 453
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V P
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 454 H 456
+
Sbjct: 95 Y 95
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 1.2
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 150 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 46
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
Score = 31.9 bits (69), Expect = 8.3
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -3
Query: 380 DFARPDLNTCVCRRRSKK 327
D ARP L T VC+RRSKK
Sbjct: 101 DLARPSLKTSVCKRRSKK 118
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 34.7 bits (76), Expect = 1.2
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +2
Query: 179 RSARELLTLEEKDPKRLF 232
++ARELLTL+EKDP+RLF
Sbjct: 13 KAARELLTLDEKDPRRLF 30
>UniRef50_A0EEB7 Cluster: Chromosome undetermined scaffold_91, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_91,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 726
Score = 34.7 bits (76), Expect = 1.2
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = -2
Query: 390 MMDGLRQARFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQRRRRALPSNNLLGSF 211
+MD ++ + E + + T+Q++L + H E L ++++ Q + N+L +
Sbjct: 382 IMDKMKASGKEFVDIMPTIQDMLKEKNNHTAEKALMWMRHLLNTQTEKLKPMIENILENL 441
Query: 210 SSRVRSSRA----DLTDTSERVFDAPYFTLVAETVL 115
R++ + A ++ D R+ YF +V E +L
Sbjct: 442 IERLKDAEAQVVENVMDVLARISHEQYFDMVIEKIL 477
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 34.7 bits (76), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 424 HEYAFAGSKFWHDGWTSPGQI*TPASAD 341
H +FWH GW+SP Q TPA+A+
Sbjct: 95 HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q16RQ9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 713
Score = 34.3 bits (75), Expect = 1.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 306 AWSED*GLLGASSADAGVQIWPGEVHPSCQNFDPAKAYSCPQASCATSHAF 458
A+ +D L+ + D V++W H S N DP YS P A T F
Sbjct: 229 AFQDDNTLISCGAGDGIVKVWDVRRHYSSHNRDPLPKYSFPYAGTTTLKGF 279
>UniRef50_UPI0000383240 Cluster: COG2202: FOG: PAS/PAC domain; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG2202: FOG:
PAS/PAC domain - Magnetospirillum magnetotacticum MS-1
Length = 397
Score = 33.9 bits (74), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 487 MCLPESRRTINAWDVAQLACGHEYAFAGSKFWHDGWTSPGQI*TPASADDAPRS 326
+C PE R I A A +A GH++ F G DG + + D+A R+
Sbjct: 244 LCHPEDRERIRAITAAAIAAGHDFEFQGRLMRPDGTPRDVMVRGTCTKDEAGRT 297
>UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05327.1 - Gibberella zeae PH-1
Length = 514
Score = 33.9 bits (74), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
LERRL T VF++ A S+ AR + ++V + + HP + L
Sbjct: 160 LERRLDTAVFRAMFASSVRQARQFVIHGAVKVNGKKMVHPSYAL 203
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 33.9 bits (74), Expect = 2.1
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMH 456
G + LE RL +F+ G+A +I AR L+ RHI V ++V P +
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 33.9 bits (74), Expect = 2.1
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMH 456
GL + LE RL VF+ G+A +I AR L+ HI V + V P +
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 33.9 bits (74), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
G + +LERRL V++ G A + AR L+ H+ V + V P +L+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membrane
subunit; n=1; Erythrobacter sp. SD-21|Rep: Bacteriophage
N4 receptor, inner membrane subunit - Erythrobacter sp.
SD-21
Length = 698
Score = 33.5 bits (73), Expect = 2.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 244 PSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARI 399
PS ++++ V+ +Q D+V G ++DF E + V + LAKS+ A +
Sbjct: 181 PSRDMIQLPVVSLEQRFTDFVAGTYMDDFAESHAKDLVVRQMLAKSVPSAGV 232
>UniRef50_Q0S3K5 Cluster: Putative uncharacterized protein; n=1;
Rhodococcus sp. RHA1|Rep: Putative uncharacterized
protein - Rhodococcus sp. (strain RHA1)
Length = 319
Score = 33.1 bits (72), Expect = 3.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 264 TNQRRRRALPSNNLLGSFS-SRVRSSRADLTDTSERVFDAPYFTLVAETVLSDDLQLLVK 88
T ++R A+P+N L + R R++ AD D +R F VAE +S L L+ +
Sbjct: 143 TRRQRGWAMPNNALPDVLTLRRQRAATADAADPRKRAITTFAFMTVAEISISSYLDLISE 202
Query: 87 TCLFKRTTRCHVRL 46
+ + R VRL
Sbjct: 203 NDVIQPVNRATVRL 216
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 33.1 bits (72), Expect = 3.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
LE+R+ + +SG +S++ AR +I +H+ V ++ P +++
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMI 187
>UniRef50_A3M092 Cluster: Predicted protein; n=4;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 471
Score = 33.1 bits (72), Expect = 3.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHP 450
LE+RL+ VF+S A S+ AR I + V V++HP
Sbjct: 101 LEKRLELAVFRSMFASSVRQAREFILGGSVSVNGVVIKHP 140
>UniRef50_Q6AXL3 Cluster: Leucine-rich repeat-containing protein 33
precursor; n=1; Danio rerio|Rep: Leucine-rich
repeat-containing protein 33 precursor - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 685
Score = 33.1 bits (72), Expect = 3.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 336 LQEVLNLQTKHIIEFHLFFIQYSNTNQRRRRALPSNNLLGSFSSRVRSSRADLT 175
L E L+T + + HL F + TN + R L SNN +G + S+ ++ T
Sbjct: 245 LTETFQLETLDLSDNHLLFFPFLPTNNQIRTLLLSNNRVGFYQHLANSTSSNWT 298
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 33.1 bits (72), Expect = 3.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 FLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLLC-AWTLASTWTDCS 501
F RRL T + K +A+ + A + Q H+RV VV P L+ + TW D S
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSS 164
>UniRef50_Q5DEX1 Cluster: SJCHGC09333 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09333 protein - Schistosoma
japonicum (Blood fluke)
Length = 207
Score = 32.7 bits (71), Expect = 4.8
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 246 RALPSNNLLGSFSSRVRSSRADLTDTSERVFDAPYF 139
R + S NLL S+R S+R + T T +R+FD+ YF
Sbjct: 15 RTVDSVNLLQGLSNRDESARHEATITIQRIFDSWYF 50
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 32.7 bits (71), Expect = 4.8
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLLCAWTL 477
LE R+ + +++SG+ +I AR LI +H+ V ++V +C++TL
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVN-----ICSFTL 134
>UniRef50_P27929 Cluster: 37S ribosomal protein NAM9, mitochondrial
precursor; n=7; Saccharomycetales|Rep: 37S ribosomal
protein NAM9, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 486
Score = 32.7 bits (71), Expect = 4.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 331 LERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHLL 462
LE+RL +F++ A S+ AR I ++RV ++HP + L
Sbjct: 101 LEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTL 144
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 32.3 bits (70), Expect = 6.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 310 GLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMH 456
G+ LERRL V++ GLA + AR L+ HI V + V P +
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSY 132
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 8.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 82 ARLDQELKIIGEYGLRNKREVWRVKYTLA 168
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
>UniRef50_A5K1R5 Cluster: Coatomer alpha subunit, putative; n=1;
Plasmodium vivax|Rep: Coatomer alpha subunit, putative -
Plasmodium vivax
Length = 1398
Score = 31.9 bits (69), Expect = 8.3
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 502 QSSQSMCLPESR-RTINAWDVAQLACGHEYAFAGSKFW 392
Q++ + L S RTI WD+ + AC H + +FW
Sbjct: 302 QTNDDLLLTNSEDRTIRIWDITKRACIHTFRRENDRFW 339
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 31.9 bits (69), Expect = 8.3
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +1
Query: 103 KIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGPQEIVRR*CPSTSLVRI---GV 273
+++G Y L N E + + +I++ + R GP++ VR + R+ G+
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTL---RQMGPEDKVRIDLTKQFVDRVYKLGI 87
Query: 274 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPM 453
++ Q L + + +RRL + + I A L+RQ H+R+ VV +P
Sbjct: 88 IETPQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPA 145
Query: 454 HLL 462
L+
Sbjct: 146 TLV 148
>UniRef50_Q6CF39 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome B of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 571
Score = 31.9 bits (69), Expect = 8.3
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 280 EKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPMHL 459
E KL ++ LE+RL VF+S A SI A IRQ ++ V ++H +
Sbjct: 104 EGNKKLKTPFAMQTFVHLEKRLDFAVFRSMFAASIRQAGQFIRQGNVTVNGVKIKHASYT 163
Query: 460 L 462
L
Sbjct: 164 L 164
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 31.9 bits (69), Expect = 8.3
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +1
Query: 256 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQ 435
L +GVL K D + + RRL + + +A++I A I Q H+RV
Sbjct: 82 LYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPN 141
Query: 436 VVQHPMHLL 462
++ P +L+
Sbjct: 142 LINDPAYLV 150
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,640,870
Number of Sequences: 1657284
Number of extensions: 10662494
Number of successful extensions: 32772
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 31602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32745
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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