Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0105
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   0.29 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.29 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.2  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 ASSADAGVQIWPGEVHPSCQNFDPAKAYSCP 428
           A   +A V +W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 ASSADAGVQIWPGEVHPSCQNFDPAKAYSCP 428
           A   +A V +W  +V P C+N + A  ++CP
Sbjct: 129 AYDREARVCMWADQV-PECKNEEVAGGFTCP 158


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 200 TLEEKDPKRLFEGNALLRL 256
           T EEK P+  F G  L RL
Sbjct: 225 TAEEKRPRTAFSGAQLARL 243


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316 KIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVR-KQVVQHPMHLLCAWTL 477
           +I D  +   Q   F   L  +I  A   + Q H+R+R  + +  P      WTL
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTL 676


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316 KIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVR-KQVVQHPMHLLCAWTL 477
           +I D  +   Q   F   L  +I  A   + Q H+R+R  + +  P      WTL
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTL 676


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316 KIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVR-KQVVQHPMHLLCAWTL 477
           +I D  +   Q   F   L  +I  A   + Q H+R+R  + +  P      WTL
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTL 676


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 316 KIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVR-KQVVQHPMHLLCAWTL 477
           +I D  +   Q   F   L  +I  A   + Q H+R+R  + +  P      WTL
Sbjct: 622 EISDHNDDETQVNRFVKLLVATIDEAASDVHQTHMRIRPPKKIPTPYGGRLVWTL 676


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 330 LGASSADAGVQIWPGEVHPSCQNF 401
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +1

Query: 469 WTLASTWTDCS 501
           W +   W+DCS
Sbjct: 181 WRMEGDWSDCS 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,170
Number of Sequences: 336
Number of extensions: 2633
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)