Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0105
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 173 9e-45
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 173 1e-44
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 36 0.003
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.52
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 27 1.2
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 26 2.8
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 2.8
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 26 3.7
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 25 4.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 4.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 4.8
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.4
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 6.4
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 6.4
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 8.4
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 8.4
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 173 bits (422), Expect = 9e-45
Identities = 87/140 (62%), Positives = 101/140 (72%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRG 210
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 211 EGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHH 390
+ P+ + LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 391 ARILIRQRHIRVRKQVVQHP 450
AR+LI QRHIRV KQ+V P
Sbjct: 125 ARVLIFQRHIRVGKQIVNVP 144
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 173 bits (421), Expect = 1e-44
Identities = 87/140 (62%), Positives = 101/140 (72%)
Frame = +1
Query: 31 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRG 210
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 211 EGPQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHH 390
+ P+ + LVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 391 ARILIRQRHIRVRKQVVQHP 450
AR+LI QRHIRV KQ+V P
Sbjct: 125 ARVLIFQRHIRVGKQIVNVP 144
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 36.3 bits (80), Expect = 0.003
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQ 435
L +G+L K D + RRL + K +++ + A LI Q H+RV
Sbjct: 82 LFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPH 141
Query: 436 VVQHPMHLLC-AWTLASTWTDCS 501
V+ P +L+ + TWTD S
Sbjct: 142 VITDPAYLVTRSLEDFVTWTDTS 164
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 28.7 bits (61), Expect = 0.52
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 303 CAWSED*GLLGASSADAGVQIWPGEVHPSCQNFD 404
CAWS D LL +SS D +++W +V FD
Sbjct: 437 CAWSTDSRLLVSSSQDTTLKVW--DVRSKKMKFD 468
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 370 LAKSIHHARILIRQ--RHIRVRKQVVQHPMHLLCAWTLASTWTD 495
+++S HH + ++ + + R+ ++ +P LC++TL +TW++
Sbjct: 94 VSESNHHEKEILHRTCKRYRIPLNIIDNPS--LCSFTLPATWSE 135
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 289 MKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHI 420
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 337 APRSPQSSDQAHNRVSSVFHPVLQYEPET 251
+P S S D ++N VS FH V PE+
Sbjct: 301 SPLSSSSPDASYNSVSDSFHTVAASVPES 329
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 294 FHLFFIQYSNTNQRRRRALPSNNLLGSFSSRVRSSR 187
+ ++ + YS ++ +NNL+G F R+ +SR
Sbjct: 294 YSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASR 329
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 472 SRRTINAWDVAQLACGHEYAFAG 404
+ R + W+V AC HEYA G
Sbjct: 34 NERVVRLWNVKSGACIHEYAGHG 56
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 109 IGEYGLRNKREVWRVKYTLARIRKVCS 189
+G + R R +WR++ T A IR +C+
Sbjct: 1442 LGGFLERFGRRLWRLRVTAAEIRIICT 1468
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 4 VAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 162
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 318 D*GLLGASSADAGVQIWPGEVHPSCQNFDPAKAYSCPQAS 437
D GLLGA+S GVQ PG P P + P S
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYS 1559
>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -2
Query: 249 RRALPSNNLLGSFSSRVRSSRADLTDTSERVFDAPYFTLVAETVLSDDLQLL 94
R ALP + L S+ + SR + +R+ + YF+ ++E L + +QL+
Sbjct: 45 REALPHSTTLTSYLPLLGGSRYLEEASIKRIEKSQYFSGLSEGALDNIVQLI 96
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 306 AWSED*GLLGASSADAGVQIW 368
AWS + +GA S+D V +W
Sbjct: 276 AWSRNSRFVGAGSSDKNVYVW 296
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 220 QEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERR 342
+E +R S +G++ EK M+LD V G K+E ++RR
Sbjct: 86 KETIRMDSQSEISSTMGLVGEK-MELDAVKGRKVESRVDRR 125
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 8.4
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Frame = -1
Query: 502 QSSQSMCLPESRRTINAWDVAQLACGHEYAFAGSKFWHDGWTSPGQI*TPASADDAPRSP 323
++ +S C +T++ ++ G + + F+ DG++ + P S ++P
Sbjct: 41 KAKESTCFLTFSKTLDEHAISMRKWGMDIKTKKNFFFIDGFS---MLFAPISKPSKVQAP 97
Query: 322 QSSDQAHNRVSSVFHPVLQYEPET*KGITFEQSXXXXXXXXXXLTSRPYGYERACI*RAI 143
++ N + SVF PV+Q E FE S ++ + + I +AI
Sbjct: 98 ETK----NHIKSVFAPVIQCVEE--NDFEFENSTIIIEDIDILQST--HALDSTKIQQAI 149
Query: 142 LH-ACCGDRTLR*SSTLGQDVPFQK 71
L C R + + TLG +P QK
Sbjct: 150 LELRKCFSRVIV-NVTLGAPLPQQK 173
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 155 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYV 48
LT H+ + + + +WS + F R GVT+V
Sbjct: 433 LTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHV 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,428
Number of Sequences: 5004
Number of extensions: 42880
Number of successful extensions: 162
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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