Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0105
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             194   3e-50
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 29   2.8  
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)                      27   6.6  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  194 bits (474), Expect = 3e-50
 Identities = 99/138 (71%), Positives = 108/138 (78%)
 Frame = +1

Query: 37  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEG 216
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRK          + 
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 217 PQEIVRR*CPSTSLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHAR 396
           P+ +         LVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 397 ILIRQRHIRVRKQVVQHP 450
           +LIRQRHIRVRKQ+V  P
Sbjct: 125 VLIRQRHIRVRKQLVNVP 142


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
 Frame = +1

Query: 94  QELKIIGEYGLRNKREVWRVKYTLARIRKVCS*APHPRGEGPQEIVRR*CPSTSLVRIGV 273
           +E+K++ +Y ++ + +  +       I+ + +       + P  +         L  +G+
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRVEATEQILEKLHNMGL 87

Query: 274 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARILIRQRHIRVRKQVVQHPM 453
           +  K+  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P 
Sbjct: 88  ISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 454 HLLCA-WTLASTWTDCS 501
            L+        TWTD S
Sbjct: 147 FLVAKNMEDFVTWTDTS 163


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 161 RSLVSVRSARELLTLEEKDPKRLFEGNALLRL 256
           +S    RSA ELL   EK+ KRL E NA L +
Sbjct: 18  KSNADTRSAAELLDKSEKERKRLSEKNAQLTI 49


>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 273 YSNTNQRRRRALPSNNLLGSFSSRVRSSRADLTDTSERV 157
           ++   Q R R LP  N LGS S     +R +  D +ER+
Sbjct: 328 FTQAAQMRDRDLPYTNWLGSLSGSEGRARTEKDDETERI 366


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 256 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARIL 402
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 288 DETRLCAWSED*GLLGASSADAGVQIW 368
           D  + CAWS +   + +SSAD  V +W
Sbjct: 89  DRVKSCAWSPNGEYVASSSADGRVTLW 115


>SB_30399| Best HMM Match : ERM (HMM E-Value=0.37)
          Length = 562

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 SESTVSATSVKYGASNTRSLVSVRSARELLTL 205
           SE   S+   KY A+N R + S +++REL T+
Sbjct: 382 SEQQSSSAVEKYSANNNRHIASNQNSRELSTV 413


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 303 CAWSED*GLLGASSADAGVQIW 368
           C+WS D  ++ A SAD  V +W
Sbjct: 9   CSWSPDGLMIAAGSADRFVYVW 30


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 500 EQSVHVLARVQAHNK 456
           EQSV+VLAR QAH K
Sbjct: 217 EQSVYVLARSQAHKK 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,929
Number of Sequences: 59808
Number of extensions: 343347
Number of successful extensions: 1653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)