Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0104
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   2.1  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    27   2.8  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   3.7  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   3.7  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   4.9  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   4.9  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   4.9  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   8.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.6  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 378 NIANSKNGTELPNVDAR*QS*ADSGDQ---TNIFDDKASTTGYSHSLPKMVA*PLTATAE 208
           N   + N    PN  A   + AD  D+   + +      TTG S+S P  VA P+ A   
Sbjct: 106 NAPANTNAAYYPNAAATTTTNADGSDKGLFSGLTSSNGYTTGNSYSRPSYVA-PVAAGLG 164

Query: 207 ALSLG 193
            L+LG
Sbjct: 165 GLALG 169


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 412 DVSEKLNDALNNRLPELLETYNEQIR 489
           D S+K    L N L  LLE Y +Q+R
Sbjct: 841 DTSQKYQSELKNELYALLEQYKKQLR 866


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 446 TDFPNSSKLTTSRSGRSLSVLPLHHQQYFVNSRLNVYR 559
           ++  N SKL T R G  L+V+ +    +   +  N+YR
Sbjct: 152 SNLKNGSKLHTKRKGDDLTVVCMEGPAFSTRAESNLYR 189


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 5   SKNVDLTQSTSKK----PNDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTT 172
           S  VDL+ +TSK     P+D         S+   VA  + +G+S V+V +       P  
Sbjct: 455 SFEVDLS-TTSKLAEMVPDDVILAALSGISSPADVAHYSSQGVSAVLVGESLMRASDPAA 513

Query: 173 FSIDLALPKLSASAVAVNGQAT 238
           F+ +L    LS+S ++ NG+ T
Sbjct: 514 FARELL--NLSSSEIS-NGKKT 532


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -1

Query: 513 RGNTLNDLPDLL---VVSFEEFGKSVVQSVIQLFGYVVAEENNFESGLNIA 370
           +GN +ND  D+    +    EFGK  +  +   FG   ++      G+NIA
Sbjct: 95  KGNGINDFKDIKGKRIGYVGEFGKIQLDDLCSKFGLSPSDYTAIRCGMNIA 145


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 579 HKLSKFRRYTLRRLFTKY 526
           HK  K+  Y+L R+FT+Y
Sbjct: 254 HKCKKWAYYSLNRIFTRY 271


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -1

Query: 507 NTLNDLPDLLVVSF-----EEFGKSVVQSVIQLFGYVVAEENNFESGLNIANSKN 358
           NTL+D  D LV++F     +      +++++Q+F  V AEE++ E   +I ++K+
Sbjct: 163 NTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSDEVLKSIRDAKS 217


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 409 NDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTI 528
           ND+ E L  A+ +  PEL+ +   Q++EI+   TSS + +
Sbjct: 55  NDL-ELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAV 93


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 160 ETNYIQHRPCPPQTQRLCCRRQRSG-HHLWQGMAVASSGSLVVEDI 294
           ETN I  + CP + +++  R  R+G  H+   +  A  G  V E +
Sbjct: 55  ETNTIGEQRCPFEHKKVVARYHRAGAKHVEDAIEAALRGKKVWESL 100


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 440 KASFSFSDTSLPKRTTLRADSTLPTVRT 357
           K   SFS TSLP  TT  A S L T  T
Sbjct: 341 KLDSSFSPTSLPTFTTNSASSGLSTSYT 368


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 368 TVRTALSSLTLMLGSNRKLTVETRRISSTTRL 273
           T ++ + SL   +G+ RK+T+  RR+   TRL
Sbjct: 55  TKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,711
Number of Sequences: 5004
Number of extensions: 41704
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)