Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0104
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 33 0.23
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818... 31 0.71
06_01_0441 + 3130906-3131424,3131847-3132269 31 0.71
02_01_0313 + 2097302-2097657,2099389-2100502 30 1.6
01_06_0753 - 31711300-31713066 30 1.6
10_08_0479 - 18199310-18199348,18199938-18200255 29 2.9
11_01_0286 + 2128109-2128175,2128264-2128337,2128566-2128674,212... 29 3.8
07_03_0236 - 15571010-15571117,15571413-15571444,15572014-15572209 28 6.6
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 28 6.6
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 27 8.7
03_01_0604 + 4449416-4449766,4450150-4450374 27 8.7
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 27 8.7
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 20 LTQSTSKKPNDYTFPISDIFSASGTVAELALEGISNVVVNDVTFNLLRPTTFSIDLALPK 199
LT + KK YT +S ++ T+ ++ ++ SN+ F++L T + LP
Sbjct: 78 LTSTAVKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPD 137
Query: 200 LSASAV 217
++ V
Sbjct: 138 YNSGKV 143
>09_04_0461 +
17781413-17781474,17781576-17781629,17781729-17781839,
17781921-17781991,17782256-17782449,17783019-17783096
Length = 189
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 373 NVESALKVVLFGNDVSEKLNDALNNRLPE--LLETYNEQIREIVERITSSSSTI 528
NVE+AL+VV +V+EKL + N LPE L E++ I E + + +
Sbjct: 105 NVETALEVVEHAAEVTEKLAANVANALPENGTLHKLAEEVEYIAEIVDKDAQKV 158
>06_01_0441 + 3130906-3131424,3131847-3132269
Length = 313
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 277 GFHYWLQPFPAKDGGLTVDGDSRGAEFGEGKVDAECSWS 161
G H WL+ A+ L D D RG G+G+ +W+
Sbjct: 7 GHHVWLRS-RAQGTYLRADDDGRGVSMGQGRASVHAAWT 44
>02_01_0313 + 2097302-2097657,2099389-2100502
Length = 489
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 11 NVDLTQSTSKKPNDYTFPISDIFSASGTVAELALEGISNVVVNDVTF-NLLRPTTFSIDL 187
N D+ QS++ KP+D F +DI T+ + + VN F +L + F +D
Sbjct: 167 NADVYQSSTSKPSDGDFR-TDIHDLMLTIVKFLSDTGGAFTVNIYPFISLYSDSNFPVDY 225
Query: 188 ALPKLSASAVAVNGQAT 238
A +AS + V+G AT
Sbjct: 226 AFFDGAASPI-VDGSAT 241
>01_06_0753 - 31711300-31713066
Length = 588
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 226 VDGDSR-GAEFGEGKVDAECSWSQKVESDVIDDNVADA-LESQFGYCARCAEDVRNWESV 53
VDG S G +C W + E+D+ID D+ ++ R ++ + + E +
Sbjct: 187 VDGSSPLGKRRKSAAFSRQCQWEDEKETDLIDAECGDSRTQAAEAEVERSSQSIGDLEEM 246
Query: 52 IVRLFRRRLGQVHVLGY 2
V R++ V ++GY
Sbjct: 247 PVFGERKQFNAVDLVGY 263
>10_08_0479 - 18199310-18199348,18199938-18200255
Length = 118
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 160 ETNYIQHRPCPPQTQRLCCRRQRSGHHLWQGMAVASSGS 276
ET + QH PP+ Q C R+R HH + SGS
Sbjct: 27 ETRHAQHHEKPPRHQSACLSRRRL-HHAAHVVRTGVSGS 64
>11_01_0286 +
2128109-2128175,2128264-2128337,2128566-2128674,
2129138-2129220,2129333-2129491,2130407-2130508,
2130595-2130741
Length = 246
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 445 NRLPELLETYNEQIREIVERITSSSSTIFCKQPP 546
N LP+LLE Y E++R +E + + Q P
Sbjct: 154 NFLPDLLEIYEERVRTFIEDTSGKDMLVLNVQDP 187
>07_03_0236 - 15571010-15571117,15571413-15571444,15572014-15572209
Length = 111
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 185 LALPKLSASAVAVNGQATIFGREWL*PVVEALSSKIFVWSPLSAYDCYLASTLGS 349
+A+P + +A++ AT PVV+ LSS SPLS + C + G+
Sbjct: 1 MAMPSVGIAALSSTSIATPPRPRRQGPVVDVLSSAGITTSPLSRWSCLVPPLQGA 55
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -3
Query: 322 IVS*QWRPDEYLRRQGFHYWLQPFPAKDGGLTVDGDSRGAE-FGEGKVDAECSWSQKVES 146
IV ++ P ++ QG Y + P + GGL VD G F G + EC V+
Sbjct: 480 IVPSRFEPCGLIQLQGMRYGVVPICSSTGGL-VDTVKEGVTGFHMGLFNVECETVDPVDV 538
Query: 145 DVIDDNVADALE 110
+ V AL+
Sbjct: 539 TAVASTVKRALK 550
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 364 TVGNVESALKVVLFGNDVSEKLNDALNNRLPE--LLETYNEQIREIVERITSSSSTI 528
T NVE+A +VV +V+EKL + + LPE L+ E+I I E + + +
Sbjct: 90 TARNVETAAEVVEQIAEVTEKLASNVADHLPENGCLQKVVEKIEYIAEVVDEDAEKV 146
>03_01_0604 + 4449416-4449766,4450150-4450374
Length = 191
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 304 RPDEY-LRRQGF-HYWLQPFPA-KDGGLTVDGDSRGAEFGEGKVDAE 173
RP + LRR+G WL P KD GD G EFG V+AE
Sbjct: 10 RPSRWRLRRRGAARRWLDDEPEEKDTSCMTTGDG-GGEFGRSVVEAE 55
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 182 DLALPKLSASAVAVNGQATIFGREWL*PVVEALSSKIFV 298
D A A AVAV GQ T ++ P+V++ K+ V
Sbjct: 65 DTATVGAEAEAVAVTGQVTEVNKDTFWPIVKSAGPKVVV 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,627
Number of Sequences: 37544
Number of extensions: 279997
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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