Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0104
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2) 33 0.24
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 32 0.31
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 31 0.55
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0) 29 3.9
SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9) 29 3.9
SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065) 28 5.1
SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07) 28 6.7
SB_51854| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 27 8.9
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79) 27 8.9
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21) 27 8.9
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 27 8.9
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025) 27 8.9
SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16) 27 8.9
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_21808| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.067) 27 8.9
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
Length = 277
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 346 ELSAVLTVGNVESALKVVLFGNDVSEKLNDALNNRLPELLET-YNEQIREIVE 501
E ++ ++ LK +L ND+ +KL+DAL N E + + + ++E E
Sbjct: 48 EFKKLIWKDGIQEKLKEILVSNDMQQKLSDALKNNSTETMTAQFTQALKEACE 100
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 434 SFSFSDTSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL 273
+F+ S LP+ ++L+A S PT + S ++L SN K + T STT L
Sbjct: 116 AFTTSLMFLPRTSSLKASSNTPTALSTTSLMSLPSTSNLKASSNTPTALSTTSL 169
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 413 SLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRL 273
SLP ++L A S PT +A S ++L S+ K + + STT L
Sbjct: 195 SLPSTSSLEASSNTPTALSATSLMSLPSTSSLKASSNSPSALSTTSL 241
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 31.5 bits (68), Expect = 0.55
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Frame = +1
Query: 268 SGSLVVEDIRLVST---VSLRLLPSINVRELSAVLTVGNVESALKVVLFGNDVSEKLNDA 438
+G + ++LV T +++L+ + N + V+T GN +S +K+V+ GND + KL
Sbjct: 854 TGKRIDSTVKLVVTGNDSTVKLVVTGNDSTVKLVVT-GN-DSTVKIVVTGNDSTVKLVVT 911
Query: 439 LNNRLPELLETYNEQIREIVERITSSSSTI 528
N+ +L+ T N+ ++V +T + ST+
Sbjct: 912 GNDSTVKLVVTGNDSTVKLV--VTGNDSTV 939
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 401 SSATTYPKS*MTL*TTDFPNSSKLTTSRSGRSLSVLP 511
SSATT P+S + TT SS + T RSG S + P
Sbjct: 237 SSATTTPRSDSSAMTTPGSGSSAMATPRSGSSATTTP 273
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 401 SSATTYPKS*MTL*TTDFPNSSKLTTSRSGRSLSVLPLHH 520
SSA P+S + TT +SS +TT++SG S + P+ +
Sbjct: 257 SSAMATPRSGSSATTTPRSDSSAITTTKSGSSSQITPIRN 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 404 SATTYPKS*MTL*TTDFPNSSKLTTSRSGRSLSVLP 511
S T P+S + TT SS +TT+RSG S++ P
Sbjct: 178 SLKTTPRSGSSATTTPRSGSSAITTARSGSSVTKTP 213
>SB_34413| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 650
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 465 EEFGKSVVQSVIQLFGYVVAEENNFES-GLNIANSK 361
+E GK V V+ ++G+ + E N+FE +N N K
Sbjct: 359 KEHGKCTVIGVLDIYGFEIFETNSFEQLCINYCNEK 394
>SB_47897| Best HMM Match : DUF156 (HMM E-Value=2.9)
Length = 430
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = -3
Query: 307 WRPDEYLRRQGFHYWLQPFPAKDGGLTVDGD--SRGAEFGEG-KVDAECSWSQKVESDVI 137
+ PD+ LR + W QP AK T RG + G ++A+ +++ +E+ +I
Sbjct: 253 YHPDDTLRARRPPAWRQPVHAKSAWRTGKRPFLYRGGRWAGGPALEAQAEFTKLLENAII 312
Query: 136 DDNVADALE 110
++++A +++
Sbjct: 313 ENDIAQSVQ 321
>SB_28533| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0065)
Length = 681
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T +Q R+++ + TIFC+
Sbjct: 562 LMNNSVFGKTMENIRNRVDIRLITNEKQARKLISKPNYKHRTIFCE 607
>SB_22942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T Q R+++ + TIFC+
Sbjct: 822 LINNSVFGKTMENIRNRVDIRLVTNESQARKLISKPNYQHRTIFCE 867
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T +Q R+++ + TIFC+
Sbjct: 1000 LMNNSVFGKTMENIRNRVDIRLITNEKQARKLISKPNYKHRTIFCE 1045
>SB_57914| Best HMM Match : Ion_trans_2 (HMM E-Value=7.5e-07)
Length = 564
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 286 RRQGFHYW-LQPFPAKDGGLTVDGDSRGAEFGEGK 185
R +G H++ L PF DG L V G R +EF G+
Sbjct: 48 RLKGTHFYNLDPFVDADGLLRVGGPLRRSEFSYGE 82
>SB_51854| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 447
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 286 RRQGFHYW-LQPFPAKDGGLTVDGDSRGAEFGEGK 185
R +G H++ L PF DG L V G R +EF G+
Sbjct: 148 RLKGTHFYNLDPFVDADGLLRVGGRLRRSEFSYGE 182
>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
Length = 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 241 DGGLTVDGDSRGAEFGEGKVDAEC 170
DGG DGD G + G+G D +C
Sbjct: 234 DGGGDDDGDGDGVDDGDGDGDGDC 257
>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
Length = 928
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 160 ETNYIQHRPCPPQTQRLCCRRQRSGHHLWQGMAVASSGSLVVEDIRLVSTVSLRLLPSIN 339
+ NY Q + PP T +LC + G++ +Q + +G ++E LVS+ + PS
Sbjct: 779 DDNY-QPQQHPPATTKLCHNKNIDGNYTYQPQRLEPTGDGILE---LVSSTRDKSPPSGT 834
Query: 340 VRELSAV 360
+ +S +
Sbjct: 835 FKGVSVI 841
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -3
Query: 223 DGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALESQFGYCARCAEDVRNWESVIVR 44
+G+ E EG+ D+E S + +S+ ++ D+ ES+ G C E+ E +
Sbjct: 304 EGECDSEESEEGECDSEESEEGECDSEESEEGECDSEESEEGECD--TEESEEGEVICRN 361
Query: 43 LFR 35
LF+
Sbjct: 362 LFK 364
>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
Length = 1480
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T +Q ++++ + TIFC+
Sbjct: 904 LMNNSVFGKTMENIRNRVDIRLVTNKKQAKKLISKPNYQHRTIFCE 949
>SB_38682| Best HMM Match : DAGAT (HMM E-Value=1.4e-16)
Length = 807
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 475 CKFRGVREVCCSKRHSAFRIRRCRREQL--*ERTQHCQQ 365
C+ + R+V RH F IRRC + R+Q C Q
Sbjct: 34 CRAKTARKVIPGTRHQLFAIRRCETNGVCFATRSQRCPQ 72
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 419 DTSLPKRTTLRADSTLPTVRT-----ALSSLTLMLGSNRKLTVETRRISSTTRLP 270
+T+LP TT+ ++STL +V T ++S+T M L ET S TT P
Sbjct: 1640 ETTLPPETTMASESTLASVTTMAPESTVASVTTM-APESTLAPETIIASETTVAP 1693
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 419 DTSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 270
+T+LP TT+ ++ST P + L+ T+ + S + ET + TT P
Sbjct: 1920 ETTLPPETTMASEST-PAPESTLAPETI-IASETTVAPETTMVPGTTLEP 1967
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 229 TVDGDSRGAEFGEGKVDAECSWSQKV--ESDVIDDNVADALE 110
++DGD G+E G + CS Q+ ES+ +D + +L+
Sbjct: 1237 SIDGDRGGSETGHRSTSSHCSDDQRAQEESEALDHDRLHSLQ 1278
>SB_21808| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.067)
Length = 1014
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T +Q ++++ + TIFC+
Sbjct: 745 LMNNSVFGKTMENIRNRVDIRLVTNEKQAKKLISKPNYQHRTIFCE 790
>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 400 LFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSSTIFCK 537
L N V K + + NR+ L T +Q ++++ + TIFC+
Sbjct: 896 LMNNSVFGKTMENIRNRVDIQLVTNEKQAKKLISKPNYQHRTIFCE 941
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,532
Number of Sequences: 59808
Number of extensions: 317049
Number of successful extensions: 1197
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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