Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0104
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71520.1 68414.m08267 AP2 domain-containing transcription fac...    30   1.0  
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    30   1.4  
At4g25360.1 68417.m03649 expressed protein                             29   2.4  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At2g38240.1 68415.m04696 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.2  
At1g74100.1 68414.m08582 sulfotransferase family protein similar...    28   4.2  
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla...    27   7.3  
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c...    27   7.3  
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c...    27   7.3  
At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA synt...    27   7.3  
At5g52880.1 68418.m06563 F-box family protein  ; similar to SKP1...    27   9.6  
At5g44580.1 68418.m05463 expressed protein                             27   9.6  
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR...    27   9.6  
At2g28070.1 68415.m03408 ABC transporter family protein                27   9.6  
At1g18590.1 68414.m02318 sulfotransferase family protein similar...    27   9.6  

>At1g71520.1 68414.m08267 AP2 domain-containing transcription
           factor, putative
          Length = 143

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 247 AKDGGLTVDGDSRGAEFGEGKVDAECSWSQKVESDVIDDNVADALE 110
           A D G+ VD    GA  G G  +   S +   E D +  +V D LE
Sbjct: 94  ASDAGMAVDAGFHGAVSGSGGCEERSSMANMEEEDKLSISVYDYLE 139


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 776

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 295 EYLRRQGFHYWLQPFPAKDGGLTVDG 218
           +YLRR+   YW+   P  +  L +DG
Sbjct: 394 KYLRRRDMEYWMDMLPRLENSLRIDG 419


>At4g25360.1 68417.m03649 expressed protein
          Length = 533

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 391 KVVLFGNDVSEKLNDALNNRLPELLETYNEQIREIVERITSSSST 525
           K+   G D      D L+  +P  ++T+NE + E++ R   SSST
Sbjct: 489 KITKRGPDGRPPPQDCLHWCMPGPVDTWNEMVLELIRRDRKSSST 533


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 2    VSKNVDLTQSTSKKPNDYTFPISDIFSASGTVAELALEGISNVVVNDVTF 151
            V K+ ++ Q T  KP+   F + D    +G   +  L+ +SN VV D+ +
Sbjct: 1626 VCKDHNVGQDTEPKPSSQVFSLLDENIFAGMNKDQLLKKLSNTVVKDLPY 1675


>At2g38240.1 68415.m04696 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Citrus
           unshiu][gi:4126403], leucoanthocyanidin dioxygenase
           [Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 353

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 448 RLPELLETYNEQIREIVERITSSSS 522
           ++ EL+E Y E++R++ ER+T + S
Sbjct: 158 KIRELIEKYGEEVRKLCERLTETLS 182


>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 338

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 307 WRPDEYLRRQGFHYW 263
           WRPDE L + G H+W
Sbjct: 38  WRPDEILTQYGGHWW 52


>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 295 EYLRRQGFHYWLQPFPAKDGGLTVDG 218
           +YLR +   YW+   P  + GL +DG
Sbjct: 393 KYLRGRNEEYWMDILPRLENGLRLDG 418


>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 405 EENNFESGLNIANSKNG 355
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 405 EENNFESGLNIANSKNG 355
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA
           synthase 1 (KCS1) nearly identical to GB:AAC99312
           GI:4091810 from [Arabidopsis thaliana]
          Length = 528

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 303 DQTNIFDDKASTTGYSHSLPKMVA*PLTATAEALSLGRARSMLNVVGLKRLKVTSL--TT 130
           ++  + D+     G + + PK+      A AEA+  G   S+    G+K  +V  L    
Sbjct: 166 NRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNC 225

Query: 129 TLLMPSRANSATVPDALKMSE 67
           +L  P+ + SA + +  KM E
Sbjct: 226 SLFNPTPSLSAMIVNHYKMRE 246


>At5g52880.1 68418.m06563 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 269

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 187 KVDAECSWSQKVESDVIDDNVADALESQFGYCARC 83
           ++ ++  W +  +   I  N ++AL S  GYC+ C
Sbjct: 167 RMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYC 201


>At5g44580.1 68418.m05463 expressed protein
          Length = 98

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 491 RSLSVLPLHHQQYFVNSRLNVYRLN 565
           R+ S LP HH+ +    R+N Y+ N
Sbjct: 26  RTESALPYHHELFLGRKRMNYYKPN 50


>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1046

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -1

Query: 210  EALSLGRARSML-NVVGLKRLKVTSLTTTLLMPSRANSATVPDALKMSEIGKV*SFGFFD 34
            E L L  A + L +++G   L+ T++TT + M        VP +LKM +  K  + GF  
Sbjct: 981  EVLKLRVAAAQLGDLLGNLNLEATTITTQMEMEMETMKQKVPSSLKM-KTSKPANVGF-- 1037

Query: 33   VDWVK 19
            + W++
Sbjct: 1038 MSWLR 1042


>At2g28070.1 68415.m03408 ABC transporter family protein
          Length = 730

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 417 YVVAEENNFESGLNIANSKNGTELPNVDAR*QS*ADSGDQTNIFDDKASTTGYSHSLPKM 238
           + V +  +    ++  +S    + P+VD R +  A  GD  N     A+TT  S SL KM
Sbjct: 31  FYVRKPGSLRQPISFEDSPEWEDTPDVDLRMEDEAGGGDSIN----DATTTPVSPSLSKM 86


>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 346

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 307 WRPDEYLRRQGFHYWLQP 254
           WRP +     G H+WLQP
Sbjct: 46  WRPKDPFVEYGGHWWLQP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,305
Number of Sequences: 28952
Number of extensions: 223677
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)