Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0103
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    28   0.80 
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.2  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   7.5  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.9  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 465 GFNNNIQRISLASGRTTLLVLGPGLPAW 548
           G NN +  I LA     LLV+GPG+ A+
Sbjct: 491 GGNNRLAGIMLALATVALLVIGPGIIAY 518


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 393 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRISLAS 503
           V  H   +MNNLH  +  ++H      N+   IS  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 333 TLAFGTANIFSGGTRVTTSSVHMHGSYNMNN 425
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +3

Query: 252 RASLLTNTRSVTAAHCWR--SRDAQARQFTLAF----GTANIFSGGTRVTTSSVHMHGSY 413
           + +LL NT  +T     R     + AR F L F    GT+  FS   RV  S++      
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLES 438

Query: 414 NMNNLHNDVA 443
               +HND+A
Sbjct: 439 KQIKIHNDLA 448


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 220 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRA*DSRPGGYRS 95
           +QV +    H+R+   HP S    S R  R   D+R  G RS
Sbjct: 316 TQVSRSSNHHRRYDSYHPDS-RSDSYRSKREHYDNRDTGPRS 356


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 368 SGEDVSCAKSEGELTSLGIPGPPA 297
           +GE+     +   LTS  +PGPPA
Sbjct: 884 NGENKPAESNLNHLTSAKVPGPPA 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,854
Number of Sequences: 5004
Number of extensions: 32944
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)