Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0103
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 33 0.14
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 32 0.24
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.56
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 30 0.97
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 29 2.2
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 29 2.2
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 28 3.9
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 28 5.2
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 28 5.2
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 6.9
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 27 6.9
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 27 6.9
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 27 9.1
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 27 9.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 9.1
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 27 9.1
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGPPAVSS--GHRAGVGQ*GSP 252
G+PGA G+D K +GE G PGPP G G G G+P
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPPGPGGPPGDAGGAGSDGAP 244
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSE-GELTSLGIPGPPAVSSGHRAG----VGQ*GSP 252
G PG G +V C G + S+G+PGPP G+ G GQ G P
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGNSNGPPGPPGQMGQP 247
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G PGA + S + G+ G PG PA S G G GQ G+P
Sbjct: 207 GQPGADAQSESIPGAPGQAGPQGPPG-PAGSPGAPGGPGQPGAP 249
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGP--PAVSSGHRAGVGQ*GSP 252
G PG G D S G G GP PA S G G GQ G+P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGP--PAVSSGHRAGVGQ*GSP 252
G PG G D S G G GP PA S G G GQ G+P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGP--PAVSSGHRAGVGQ*GSP 252
G PG G D S G G GP PA S G G GQ G+P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGP--PAVSSGHRAGVGQ*GSP 252
G PG +G+ S + G+ G PGP P +G G GQ G P
Sbjct: 209 GQPGQAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNGQPGGP 254
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 389 GGGDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G G PG G+ + + G PGP G R GQ GSP
Sbjct: 201 GPGQPGRDGQPGQAGQPGSSSSEPGQPGPNG-QPGPRGPPGQAGSP 245
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 255 ASLLTNTRSVTAAHCWRSRDAQARQFTLAFG--TANIFSGGTRV-TTSSVHMHGSYNMNN 425
AS+L T +TAAHC+ D + + + G N G ++ +H + Y +
Sbjct: 56 ASILDKTHLITAAHCF-EEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK-DI 113
Query: 426 LHNDVAVINHNHVG--FNNNIQRISLAS 503
+D+A++ + G FN Q I L S
Sbjct: 114 FSHDIAILEIPYPGIEFNEYAQPICLPS 141
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 383 GDPGASGED-VSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSPQI 246
G+PG G D V +G++ G G S G R GVG+ G P +
Sbjct: 182 GEPGVGGMDAVKIVSVDGKIGRRGEAGNKG-SKGSRGGVGKAGGPGV 227
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 174 TTHNPGTVEVSGFLGALKTLG 112
TTH P T + SG+ G LK G
Sbjct: 348 TTHRPKTADFSGYWGVLKAAG 368
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 174 TTHNPGTVEVSGFLGALKTLG 112
TTH P T + SG+ G LK G
Sbjct: 348 TTHRPKTADFSGYWGVLKAAG 368
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 207 CWTCDRTHEWQNFNLRASLLTNTRSVTAAHCWRSRDAQARQ---FTLAFG 347
C TCD + +Q+ ASLLT+ S+ CW S + + Q TL+ G
Sbjct: 89 CDTCDARNHFQSHP--ASLLTDLNSIGNMTCWVSTPSLSPQNVSLTLSLG 136
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 207 CWTCDRTHEWQNFNLRASLLTNTRSVTAAHCWRSRDAQARQ---FTLAFG 347
C TCD + +Q+ ASLLT+ S+ CW S + + Q TL+ G
Sbjct: 89 CDTCDARNHFQSHP--ASLLTDLNSIGNMTCWVSTPSLSPQNVSLTLSLG 136
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 220 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRA*DSRPGGY 101
SQ + DG +HQ + PQ Y + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 220 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRA*DSRPGGY 101
SQ + DG +HQ + PQ Y + + + P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGPP-AVSSGHRAGVGQ*GSP 252
G PGA G+ V + G G PGP A ++G GQ G P
Sbjct: 224 GAPGAPGQVVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSGQPGGP 268
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 255 ASLLTNTRSVTAAHCWRSRDAQARQFTLAFGTANIFSGGTRVTTSSVHMHGSYNMNNLHN 434
A+++ + VTAAHC + Q R F N + + ++H YN N
Sbjct: 68 ATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTADN 123
Query: 435 DVAVI 449
D+A++
Sbjct: 124 DIALL 128
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 383 GDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G+ GA G ++GE LG PG P V + VG+ G P
Sbjct: 170 GNKGAPGP-AGPVGADGEPGELGAPGAPGVQRTVASPVGEPGEP 212
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 386 GGDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G P A G++++ A E E IPGPP G R G G P
Sbjct: 81 GFRPTAYGDEITGAPLETECPGCCIPGPP----GPRGSSGTPGKP 121
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 386 GGDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G P A G++++ A E E IPGPP G R G G P
Sbjct: 118 GFRPTAYGDEITGAPLETECPGCCIPGPP----GPRGSSGTPGKP 158
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 453 HNHVGFNNNIQRISLASGRTTLLVLGPG 536
+NHV NN+ Q I + + + LGPG
Sbjct: 270 NNHVNNNNHNQNIPVLESKPKVATLGPG 297
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 386 GGDPGASGEDVSCAKSEGELTSLGIPGPPAVSSGHRAGVGQ*GSP 252
G P A G++++ A E E IPGPP G R G G P
Sbjct: 102 GFRPTAYGDEITGAPLETECPGCCIPGPP----GPRGSSGTPGKP 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,057
Number of Sequences: 27780
Number of extensions: 214464
Number of successful extensions: 939
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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