Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0101
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    27   2.3  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.3  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   5.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.2  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    26   6.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   9.2  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   9.2  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = +2

Query: 293 YGESVYCGWSPDPNTKIKARDCVDKWYSEINEFSFGKEPEVLNCGHFTQIIWRSTSELGI 472
           +GE V  GW  D   KI  +DC    +    EF  G+ P    CG   Q +    S+L  
Sbjct: 226 HGEPVAWGW--DGAKKIGVKDCGKPDFGVPVEFKEGEIPIFWGCGVTPQNV-VMMSKLPE 282

Query: 473 GSAKSKTGKLYVSQTT 520
                K G +Y++  T
Sbjct: 283 PVYSHKPGYMYLTDLT 298


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 545 YSLKMSYPLGLCSSALATIVLLENRTTIWLLLHQTEYLLEDPSLVLPLRLQVKEVART 718
           Y   + +   +CS+A+   VL   +    L   QTE LL D S  L L +Q+++ A++
Sbjct: 158 YLFLLGHAKSICSAAVRLDVLTSFQYVSTLAHPQTESLLRDSS-QLALNMQLEDTAQS 214


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 558 IFNE*PAVISWWIVVCET*SFPVLLFALPIP 466
           ++N  P    WW V+C T    VL+F + +P
Sbjct: 394 VYNSNPLASPWW-VICNTFGSVVLIFWIVVP 423


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 374 SEINEFSFGKEPEVLNCGHFTQIIWRSTSELGIGSAKSKTGKL-YVSQTTIHQEITAGY 547
           SE  + +  ++  V N  +   +I + T++  +GS   K GKL Y  Q T+ +E T+ Y
Sbjct: 616 SENAKLAAQRDAAVENANYSRSLIQKKTTDETVGSLIEKVGKLEYEVQGTL-EEATSYY 673


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 126 SKSNDFENEALEVHNEYRREHGV---SPLVINKEISKISQKWAEELLKE 263
           +K  D E E LE   E RR+        ++ NK+  K    WA +L++E
Sbjct: 661 NKDQDDE-EILEERRESRRDSKTFLSRTMLYNKDTGKADSAWASDLIEE 708


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 326 DPNTKIKARDCVDKWYSE-INEFSFGKEPEVLNCGH 430
           DPN     R+ ++    E I +F  GK+  ++N GH
Sbjct: 296 DPNILYGTREIIEARTKEMIQDFGGGKQGYIINLGH 331


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 168 NEYRREHGVSPLVINKEISKISQKW---AEELLKETVSPTV*TKGMVKVSTADGHLTQIQ 338
           +E+  E+G+S  +INKE++ + +K       L +E ++  + ++G   +    G+L  I 
Sbjct: 248 SEHVIENGISEDLINKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGYLESIH 307

Query: 339 RSKLE 353
              L+
Sbjct: 308 PELLQ 312


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 166 WTSNASFSKSFDLEVNSLLIVLYVTSIPLNYL 71
           WTSNA + K+ D + + + I  YVT   + ++
Sbjct: 52  WTSNAFYMKTID-QFHEMYISAYVTPSNMRFM 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,021
Number of Sequences: 5004
Number of extensions: 60727
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)