Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0101
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49887-5|CAE17773.1| 184|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AF016664-11|AAK72083.1| 204|Caenorhabditis elegans Hypothetical... 43 2e-04
Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z74037-3|CAA98491.1| 289|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical pr... 36 0.043
U42839-2|AAC69015.1| 425|Caenorhabditis elegans Venom-allergen-... 35 0.075
U42839-1|AAM54195.1| 424|Caenorhabditis elegans Venom-allergen-... 35 0.075
AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom allerge... 35 0.075
U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1... 34 0.13
U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1... 34 0.13
U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,... 34 0.13
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 32 0.40
AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical ... 32 0.40
AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precur... 29 2.8
AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precur... 29 2.8
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 2.8
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 2.8
Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical pr... 29 4.9
AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical ... 28 6.5
AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b prote... 28 8.6
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 28 8.6
AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z49887-5|CAE17773.1| 184|Caenorhabditis elegans Hypothetical
protein F09B9.5 protein.
Length = 184
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 254 SKRDSLAYSLNQRYGESVYCGWSPDPNTKIKARDCVDKWYSEINEFSFGKEPEVLNCGHF 433
+K+ +++S GE++ + PD I A V+ WY E ++ + +F
Sbjct: 48 AKQAHISFSELSGIGENITF-FPPD----IDAESVVEHWYQEHEKYEYETPGWQTGTNYF 102
Query: 434 TQIIWRSTSELGIGSA 481
TQ+IWRST E+G+G A
Sbjct: 103 TQVIWRSTKEIGVGCA 118
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 138 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEELLKE 263
+F ++ L HN R+ H L ++E+S+++Q+WA++L K+
Sbjct: 9 EFVDQMLLEHNTRRKMHSAPNLECSEELSEMAQQWADKLAKQ 50
>AF016664-11|AAK72083.1| 204|Caenorhabditis elegans Hypothetical
protein D2062.1 protein.
Length = 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +2
Query: 254 SKRDSLAYSLNQRYGESV--YCGWSPDPNTKIKARDCVDKWYSEINEFSFGK-EPEVLN- 421
+K +++ ++YGE+V +C P + A+ V +Y E + + +PE+L
Sbjct: 85 AKSGWISHEKPRKYGENVAMFCQSGCWPLPQTLAQAMVHLFYIEGIGYDYSSFKPELLKE 144
Query: 422 CGHFTQIIWRSTSELGIGSAKSKTGKLYVSQTTIH 526
GHFTQI+W+S+ ++G+G + K+ + T H
Sbjct: 145 NGHFTQIVWKSSRKIGVGISIGKSSQPPYIPTMFH 179
Score = 35.5 bits (78), Expect = 0.043
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 165 HNEYRREHGVSPLVINKEISKISQKWAEELLK 260
HN YR +HG PLV + + +++WA+E+ K
Sbjct: 55 HNLYRSKHGAPPLVADPVMDVAAKRWADEMAK 86
>Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.5 protein.
Length = 209
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Frame = +2
Query: 269 LAYSLNQRYGESVYCGWSPDPNTKIK--ARDCVDKWYSEINEFSFGKEPEVL-----NCG 427
+ +S ++ YGE+++ +S P T + + VD W SE F + G
Sbjct: 77 MQHSPDKSYGENLFWAYSSSPITDLDKYVQSAVDTWVSEFQMFGWNSNKFTTALWNTGIG 136
Query: 428 HFTQIIWRSTSELGIGS----AKSKTGKLYVSQTTIHQEITAGYSLKMSYPLGLCSSA 589
H TQ+ W +T ++G G+ A S Y + ++ Y K Y G SA
Sbjct: 137 HATQVAWSATGQVGCGAKNCGADSVRVGSYKATIVCQYKVPGNYLFKNIYNSGAKCSA 194
>Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical
protein C07A4.3 protein.
Length = 363
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Frame = +2
Query: 269 LAYSLNQRYGESVYC-GWSPDPNTKIKARDCVDKWYSEINEFSFGK-EPEVLN-CGHFTQ 439
L + +YGE++ S P+ K A + +Y+E F++ + P + GHFTQ
Sbjct: 244 LVHEQPSKYGENLTSFASSKFPSPKTCAAALIHGFYTEGYGFNYTRFNPGSWSKVGHFTQ 303
Query: 440 IIWRSTSELGIGSAKSKTGKLY 505
++W+++ ++G+G + +K G +Y
Sbjct: 304 LLWKNSRKIGVGVSVAKRGTMY 325
Score = 34.3 bits (75), Expect = 0.099
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 138 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEEL 254
D + + HN+YR H + ++ ++ ++QKW++E+
Sbjct: 199 DLKKWIVHFHNKYRAHHSSPAVTVDSNLTNLAQKWSDEM 237
>Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical
protein T05A10.5 protein.
Length = 246
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +2
Query: 296 GESVYCGWSPDPNTKIKARDCVDKWYSEINEFSFGKE----PEVLNC-----GHFTQIIW 448
G+++Y +P+ + V+KW+ E+ EF + PE+ + GH+TQ+ W
Sbjct: 123 GQNLYMSSFSNPDPRSLIHTAVEKWWQELEEFGTPIDNVLTPELWDLKGKAIGHYTQMAW 182
Query: 449 RSTSELGIGSA 481
T LG G A
Sbjct: 183 DRTYRLGCGIA 193
>Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical
protein C07A4.2 protein.
Length = 417
Score = 35.9 bits (79), Expect = 0.032
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +2
Query: 269 LAYSLNQRYGESVYC-GWSPDPNTKIKARDCVDKWYSEINEFSFG--KEPEVLNCGHFTQ 439
L + + YGE+++ G P+ + A + +Y E +++ + GHFTQ
Sbjct: 296 LVHEQPRTYGENLFFFGARHLPSPQTLAAAVIQSFYLEGIGYNYSSWRPMSFFKTGHFTQ 355
Query: 440 IIWRSTSELGIGSAKSKTGKL 502
+IW+++ ++G+G + K+ +
Sbjct: 356 LIWKNSRKIGVGVSIVKSSSI 376
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 165 HNEYRREHGVSPLVINKEISKISQKWAEEL 254
HN YR +HG L+ + + ++WA+EL
Sbjct: 260 HNVYRSKHGAPALISDSVLDSRGKRWADEL 289
>Z74037-3|CAA98491.1| 289|Caenorhabditis elegans Hypothetical
protein F57B7.2 protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 350 RDCVDKWYSEINEFSFGKEPEVLNCGHFTQIIWRSTSELG 469
++ + +W E F F K C F+Q++W+ T+ELG
Sbjct: 183 QEVIQEWEKEAQFFDFDKPRWNPKCQRFSQVVWKDTTELG 222
Score = 31.9 bits (69), Expect = 0.53
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 138 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEEL 254
+F+ L+ HNE R+ +G L + E+++++ WA +L
Sbjct: 112 NFQRSCLDAHNECRQRYGNENLCWSTELAEMAHAWAVKL 150
>Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical
protein C39E9.6 protein.
Length = 210
Score = 35.5 bits (78), Expect = 0.043
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Frame = +2
Query: 269 LAYSLNQR-YGESVYCGWSPDPNTKIK--ARDCVDKWYSEINEFSFGKEP---EVLNCG- 427
+ +S N + GE++Y WS DP + + + W E +F + + N G
Sbjct: 77 MQHSTNDKTIGENLYWEWSGDPFSDLDKFGKIATVAWDHEFEQFGWNSNKFSLALFNTGV 136
Query: 428 -HFTQIIWRSTSELGIG----SAKSKTGKLYVSQTTIHQEITAGYSLKMSYPLGLCSSA 589
H TQI W T ++G G ++ G L+ + + K Y G SA
Sbjct: 137 AHATQIAWAPTGKIGCGVKNCGRDARRGGLFQVAIVCQYRVRGNFFFKNIYNSGATCSA 195
>U42839-2|AAC69015.1| 425|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform a protein.
Length = 425
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 296 GESVYCGWSPDPNTKIK-ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRS 454
GE++Y S + KI+ A D W+SE+ +F G + + GH+TQ+ W
Sbjct: 306 GENLYM-ISINNMPKIQTAEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEG 364
Query: 455 TSELG 469
T+E+G
Sbjct: 365 TTEIG 369
>U42839-1|AAM54195.1| 424|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform b protein.
Length = 424
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 296 GESVYCGWSPDPNTKIK-ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRS 454
GE++Y S + KI+ A D W+SE+ +F G + + GH+TQ+ W
Sbjct: 305 GENLYM-ISINNMPKIQTAEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEG 363
Query: 455 TSELG 469
T+E+G
Sbjct: 364 TTEIG 368
>AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom
allergen-like protein protein.
Length = 425
Score = 34.7 bits (76), Expect = 0.075
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 296 GESVYCGWSPDPNTKIK-ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRS 454
GE++Y S + KI+ A D W+SE+ +F G + + GH+TQ+ W
Sbjct: 306 GENLYM-ISINNMPKIQTAEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEG 364
Query: 455 TSELG 469
T+E+G
Sbjct: 365 TTEIG 369
>U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1,
isoform c protein.
Length = 287
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 353 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 490
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1,
isoform b protein.
Length = 301
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 353 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 490
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,
isoform a protein.
Length = 312
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 353 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 490
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 275 YSLNQRYGESVYCGWSPDPNTKIK-ARDCVDKWYSEI-----NEFSFGKEPEVLNCGHFT 436
+S+ GES++ +S +T + A KW++E + + + GH
Sbjct: 81 HSVVMNTGESIFWHFSSSLSTPEQYATLAPQKWWNEFETNGWDSLIYNHASQRFQIGHAV 140
Query: 437 QIIWRSTSELGIGSAKSKTG 496
Q+ W +TS++G G +K G
Sbjct: 141 QMAWHTTSKVGCGYSKCAVG 160
>AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.2 protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 YGESVYCGWSPDPNTKIKARDCV--DKWYSEINEFSFGK---EPEVLN--CGHFTQIIWR 451
YGE++Y WS T + + W E ++ + + ++ + GH TQ+ W
Sbjct: 84 YGENLYWSWSSSAPTSLDKFGVAASNSWEKEFQDYGWESTYMDADLFDSGIGHATQMAWA 143
Query: 452 STSELGIG 475
T+++G G
Sbjct: 144 ETNKIGCG 151
>AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical
protein F02E11.5 protein.
Length = 207
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Frame = +2
Query: 290 RYGESVYCGWSPDPNTKIKARD-----CVDKWYSEINEFSF--GKEPEVL---NCGHFTQ 439
+YGE++Y WS IK+ D W SE ++ + K L GH TQ
Sbjct: 84 KYGENLYWRWS---GAVIKSIDDYGVRASGAWASEFQKYGWKTNKLDSALFKTGIGHATQ 140
Query: 440 IIWRSTSELGIG 475
+ W ST +G G
Sbjct: 141 MAWASTGSIGCG 152
>Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical
protein F35E12.1 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Frame = +2
Query: 293 YGESVYCGWSPDPNTK--IKARDCVDKWYSEINEFS-----FGKEPEVLNCGHFTQIIWR 451
YGE+++ WS T I + W E + + K+ E GH TQ++W
Sbjct: 166 YGENMHRSWSSKEITDLDIYGTKAAESWAGEFQKKGWESNIYTKDTEKSGIGHATQMVWS 225
Query: 452 STSELGIG 475
+G G
Sbjct: 226 QAYLIGCG 233
>Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical
protein C26D10.5b protein.
Length = 596
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 472 RKCEEQDWKALCLANYYPPGNYS 540
+ C+EQ +K++ AN+Y PG+++
Sbjct: 329 KNCKEQTYKSILSANHYMPGHFN 351
>Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical
protein C26D10.5a protein.
Length = 658
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 472 RKCEEQDWKALCLANYYPPGNYS 540
+ C+EQ +K++ AN+Y PG+++
Sbjct: 329 KNCKEQTYKSILSANHYMPGHFN 351
>AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precursor
protein.
Length = 596
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 472 RKCEEQDWKALCLANYYPPGNYS 540
+ C+EQ +K++ AN+Y PG+++
Sbjct: 329 KNCKEQTYKSILSANHYMPGHFN 351
>AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precursor
protein.
Length = 658
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 472 RKCEEQDWKALCLANYYPPGNYS 540
+ C+EQ +K++ AN+Y PG+++
Sbjct: 329 KNCKEQTYKSILSANHYMPGHFN 351
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 190 PCSRLYSLWTSNASFSKSFDLEVNSLLIVLYV 95
P ++L SL N +K F + ++SLL+ LYV
Sbjct: 394 PLAKLSSLIGENVQLAKMFGIPIDSLLVELYV 425
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 190 PCSRLYSLWTSNASFSKSFDLEVNSLLIVLYV 95
P ++L SL N +K F + ++SLL+ LYV
Sbjct: 389 PLAKLSSLIGENVQLAKMFGIPIDSLLVELYV 420
>Z81548-4|CAB04465.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 426 PQFNTSGSLPKENSLISLYHLSTQSLALIFVFGSGDHPQ*TLSPYLWFRL 277
PQ GS P S S T SLAL+ + S P +S ++WF L
Sbjct: 800 PQPGPRGSSPPAPSAPSAPETDTNSLALVDLTDSPADPTPEVSGFMWFIL 849
>Z81503-5|CAB04114.1| 916|Caenorhabditis elegans Hypothetical
protein F14F7.5 protein.
Length = 916
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 426 PQFNTSGSLPKENSLISLYHLSTQSLALIFVFGSGDHPQ*TLSPYLWFRL 277
PQ GS P S S T SLAL+ + S P +S ++WF L
Sbjct: 800 PQPGPRGSSPPAPSAPSAPETDTNSLALVDLTDSPADPTPEVSGFMWFIL 849
>AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical
protein E01A2.2a protein.
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 102 RTMSRLFTSKSNDF-ENEALEVHNEYRREH 188
+T + TS+ +D E +A++ +NEY+ EH
Sbjct: 85 QTFKKFLTSQEDDISEEDAIKKYNEYKTEH 114
>AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b protein
protein 17 protein.
Length = 276
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 469 PQFTRRSPDYLCEMTTVQHFRLL 401
P + R S DY+CE VQ+F L
Sbjct: 169 PNYLRLSNDYICESILVQNFETL 191
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 495 PVLLFALPIPNSLVDLQIICVK*PQFNTSGSLPKENSLISL 373
PV+ L + NS+ DL +I + N+ LP NS+ L
Sbjct: 345 PVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPMNNSIFDL 385
>AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical
protein Y14H12A.2 protein.
Length = 101
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 368 WYSEINEFSFGKEPEVLNCGHF 433
W S + F EP++L CGHF
Sbjct: 11 WASWPSPAKFSGEPDILQCGHF 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,210
Number of Sequences: 27780
Number of extensions: 336560
Number of successful extensions: 846
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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