Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0100
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    28   1.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   3.8  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   5.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.7  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -1

Query: 309 VVQEFEERRWMHDARKYQQSVVLICKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSV 130
           V  E +   W H++    Q       L  +  +S  H   S   N++      P P+SS+
Sbjct: 101 VSPEMDGWPWHHNSSSNPQGYAWTPSLLSSNATSYLHSGSSPHGNTSN----HPSPISSL 156

Query: 129 ERLPLRSS 106
           E LP RSS
Sbjct: 157 ESLPSRSS 164


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 639 LHRPLPHNNAFNWVGWQLIASTSAIASAVPLL 734
           L R L HN + NW+ + L+ ++SAI+ ++ LL
Sbjct: 180 LSRWLVHNKSENWMFFILLNASSAISMSLYLL 211


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 324 PCRNKVVQEFEERRWMHDARKYQQSVVLICKLCY 223
           PCRN V Q        HD      +V+ +C L +
Sbjct: 303 PCRNSVYQAIRRSYSAHDMSDGYHAVITLCILLF 336


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 177 WTGWISYHGLHWNIP 221
           W GW  Y  +HW  P
Sbjct: 434 WLGWTCYPSVHWAAP 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,611
Number of Sequences: 5004
Number of extensions: 60332
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)