Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0100
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716... 32 0.43
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763... 29 3.0
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506... 29 4.0
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 29 4.0
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742... 24 4.9
06_02_0272 + 13646814-13647305,13647983-13648612 28 7.0
02_01_0004 + 33108-33752 28 7.0
01_07_0045 - 40706873-40706956,40707083-40707253,40707585-407078... 24 8.2
04_04_1359 - 32886181-32886789 28 9.2
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827... 28 9.2
01_06_0808 + 32134765-32136570 28 9.2
01_06_0460 + 29545030-29546377,29546463-29547085 28 9.2
01_01_0244 - 2005152-2005649,2006186-2006254 28 9.2
>01_01_0909 -
7163886-7163931,7164148-7164254,7164370-7164435,
7164720-7164784,7164937-7165000,7165685-7165794,
7165972-7166059,7166100-7166297
Length = 247
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 243 LICKLCYAECSSVDHGMISSLSNSTTKILLEPVPVSSVERLPLRSSFNK 97
LI + Y ECSS I ++ ++ K++L+P V R L+SS N+
Sbjct: 182 LIGAVAYIECSSKTQRNIKAVFDTAIKVVLQPPRHKDVTRKKLQSSSNR 230
>08_02_0871 -
22075553-22075731,22075815-22076028,22076309-22076351,
22076557-22076616,22077522-22077593,22078163-22078368,
22078782-22078837,22079540-22079777,22079908-22080081,
22080157-22080292,22080822-22080853,22081563-22081619,
22081713-22081965,22082057-22082145,22082590-22082643,
22084016-22084207,22085338-22085499
Length = 738
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -1
Query: 336 LMMLPCRNKVVQEFEERRWMHDARKYQQSVVLICKLCYAECSSVDHGMISSLSNSTTKIL 157
+ + P NK+ +E + + D + Y + V L +C A C+ D +++SL + +L
Sbjct: 208 IYITPPGNKMAEEEDTSEYFPDIKIYDEDVHLKLLICGAHCTP-DSSILNSLEDGLNALL 266
>11_01_0631 -
5063622-5063635,5065050-5065203,5065280-5065441,
5065657-5066633,5067502-5067523
Length = 442
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 548 WCMTPLVASVPPLSVSTI 601
WCMTPL+ S+P L +TI
Sbjct: 261 WCMTPLLESMPSLVEATI 278
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 606 LHPSGGSQSAVLHRPLPHNNAFNWVGWQLIASTS 707
+ PS G+ +++L L HN+ ++ W+L++S+S
Sbjct: 92 ISPSLGNLTSLLRLNLSHNSLSGYLPWELVSSSS 125
>04_03_0781 +
19572795-19573540,19573906-19573956,19574179-19574251,
19574772-19574876
Length = 324
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 456 NHHHHHQPIS 427
+HHHHHQ ++
Sbjct: 61 HHHHHHQEVA 70
Score = 23.4 bits (48), Expect(2) = 4.9
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -1
Query: 459 YNHHHHH 439
+NHHHHH
Sbjct: 59 HNHHHHH 65
>06_02_0272 + 13646814-13647305,13647983-13648612
Length = 373
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 582 LYQYQQSLLHPSGGSQSAVLHRPLPHNNAFNWVGWQLIASTSAIASAVP 728
L + Q L SGG Q+ V +PL AF+W + A+ A P
Sbjct: 308 LQENLQLPLFLSGGMQAGVSSQPLSGGGAFHWQSGMDVKVEGAVGRAPP 356
>02_01_0004 + 33108-33752
Length = 214
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 459 YNHHHHHQPISLHCWIYVSLRHNERSFAFRISSISLQVILWLMMLP 322
Y H HHH+ I +S R + + +S SL +ILWL++ P
Sbjct: 15 YKHQHHHRAIHGR---RISRRTLVVASSAVVSLASLSLILWLVLRP 57
>01_07_0045 -
40706873-40706956,40707083-40707253,40707585-40707812,
40708414-40708423,40709108-40709553
Length = 312
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -1
Query: 462 FYNHHHHH 439
F++HHHHH
Sbjct: 76 FHHHHHHH 83
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = -1
Query: 459 YNHHHHHQPI 430
++HHHHH+ +
Sbjct: 78 HHHHHHHRDV 87
>04_04_1359 - 32886181-32886789
Length = 202
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 465 IFYNHHHH---HQPISLHCWIYV-SLRHNERSFAFRISSISLQVILWLMMLPCRNKVVQE 298
++Y+HHHH H P+S + YV + + S + SS SL C V+ +
Sbjct: 92 LYYSHHHHRLMHSPVSPMDYAYVMASSSSSSSSSLPSSSSSLSPSPPASSSSCGVVVITK 151
Query: 297 FEERR 283
EE R
Sbjct: 152 EEEER 156
>02_04_0561 +
23879976-23879981,23880531-23882558,23882687-23882722,
23882826-23882939,23883158-23883226,23883311-23883445
Length = 795
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 123 AFQRWKLEPARAESSS*NWTGWISYHGLHWNIPRNTTYKSKQPTVDIFL 269
AFQ+ + + NW I+Y+GL N + Y+ + V +FL
Sbjct: 345 AFQKAVYDSLTIDEFEGNWNALITYNGLQGNDWLRSIYECRYSWVPVFL 393
>01_06_0808 + 32134765-32136570
Length = 601
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -1
Query: 240 ICKLCYAECSSVDHGMISSLS---NSTTKILLEPVPVSSVERLPLRSSFNKVEASTLTGC 70
I KL E S + +SSL N K+ ++ V ++S +RL F ++ ST C
Sbjct: 207 IDKLSMEELLSTNWTKLSSLIKRWNRAMKVFVQ-VYLTSEKRLS-NHVFGELSESTADLC 264
Query: 69 IYKVSLSSKM 40
Y++SLSS M
Sbjct: 265 FYEISLSSVM 274
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +3
Query: 537 NFSGGA*LLSSPRYRLYQYQQSLLHPSGGSQSAVLHRPLPHNNAFNWVGWQLIASTSAIA 716
+F+G L +P R Q +++ GGS + H+P N W + +A+
Sbjct: 230 SFTGNPELCGAPLRRRCNEQLHMVYGGGGSGADTSHQPKRGRRRSN-DRWMVAMIMAAVG 288
Query: 717 SAVPLLISEEL 749
+AV L++ L
Sbjct: 289 AAVASLVAAAL 299
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 560 PLVASVPPLSVSTILTTPKRRLAICSSAQTVAA 658
P AS PPL +S + T P +L + +++ A
Sbjct: 112 PAAASAPPLPLSLLFTAPVAKLLVVAASPAAVA 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,949,387
Number of Sequences: 37544
Number of extensions: 430245
Number of successful extensions: 1629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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