Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0100
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 25 0.44
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 27 1.8
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 25 2.1
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 2.5
SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7) 29 3.1
SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 7.7
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 25 8.1
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 25.4 bits (53), Expect(3) = 0.44
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1
Query: 459 YNHHHHHQ 436
Y+HHHHHQ
Sbjct: 45 YHHHHHHQ 52
Score = 23.4 bits (48), Expect(3) = 0.44
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 456 NHHHHHQPISLHCWIYVSL 400
+HHHHH I++ I V++
Sbjct: 71 HHHHHHHIINIIVIIIVNI 89
Score = 20.6 bits (41), Expect(3) = 0.44
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 471 KNIFYNHHHHH 439
KN + +HHHH
Sbjct: 39 KNPRHRYHHHH 49
>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = -3
Query: 736 ISNGTAEAIAEVDAISCHPTQLNALLCGNGLCRTADCEPPLGCSKDC 596
I TA A+ + I C+ Q N C C T C G + C
Sbjct: 216 IQGNTARNTAQCNTIQCNTLQGNTTQCNTTQCNTTHCNTTQGNTAQC 262
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 736 ISNGTAEAIAEVDAISCHPTQLNALLCGNGLCRTADC 626
I TA A+ + I C+ Q N + C C T C
Sbjct: 177 IQGNTARNTAQCNTIQCNTLQCNTIQCNTTQCNTTQC 213
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.1 bits (57), Expect(2) = 1.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 471 KNIFYNHHHHH 439
K I Y+HHHHH
Sbjct: 229 KTILYHHHHHH 239
Score = 21.8 bits (44), Expect(2) = 1.8
Identities = 5/8 (62%), Positives = 8/8 (100%)
Frame = -1
Query: 459 YNHHHHHQ 436
++HHHHH+
Sbjct: 249 HHHHHHHR 256
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 24.6 bits (51), Expect(2) = 2.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 567 TRGVMHHLRN*SETYVYSVFLLNRFKCK*Y*KKNIFYNHHHHH 439
T ++ H+ N + + + V ++N K + ++HHHHH
Sbjct: 532 TTTIISHIVNTTTHHHHIVHIVNTTTIIVTSSKPLSHHHHHHH 574
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 456 NHHHHHQPISL 424
+HHHHH P L
Sbjct: 568 HHHHHHHPHEL 578
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 459 YNHHHHHQ---PISLHCWIYVSLRHNERSFAFRISSISLQVILWLMMLPCRNKVVQEFEE 289
++HHHHHQ IS + YV + + +S + + +L W L R + +
Sbjct: 1260 HHHHHHHQDYADISPYTDPYVRVCFSNQSQKTEMRAQTLSP-NWDQTLVFRQVELCD--- 1315
Query: 288 RRWMHDARKYQQSVVL 241
RW H+ ++Y SVV+
Sbjct: 1316 -RW-HNIKRYTPSVVM 1329
Score = 23.4 bits (48), Expect(2) = 2.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 468 NIFYNHHHHH 439
++F+ HHHHH
Sbjct: 1251 SLFWCHHHHH 1260
>SB_53444| Best HMM Match : DUF40 (HMM E-Value=6.7)
Length = 206
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 468 NIFYNHHHHHQPISLHCWIYVSLRHNERSF 379
N Y+HHHHH P + IY +H SF
Sbjct: 80 NHHYHHHHHHSPAIIIIIIY---QHTSSSF 106
>SB_49937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 517 VHICFTLISQVVHDSSRRLGTAFISINNPYYTQAEARNLQFCT 645
++ F +IS + H + +RL + + N YY E R CT
Sbjct: 799 INSAFAIISGLGHTAVKRLKNTWEKLPNRYYKMYEVRTSSSCT 841
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 55 TDFIYATGQRASFYFIKAAPQWQPFNAGNWNRLEQNLRRRIGQAG 189
T + T QR FY+ K + +P ++ L R +GQAG
Sbjct: 625 TSKLRGTQQRQKFYYDKHSKPLEPIAVSKTDKTRGRLERCLGQAG 669
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 23.4 bits (48), Expect(2) = 7.7
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = -1
Query: 468 NIFYNHHHHH 439
++++ HHHHH
Sbjct: 278 HLYHRHHHHH 287
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 456 NHHHHHQPIS 427
+HHHHH +S
Sbjct: 283 HHHHHHHEVS 292
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 24.6 bits (51), Expect(2) = 8.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 453 HHHHHQPISLHCWIYVSLR 397
HHHHH P + + V R
Sbjct: 208 HHHHHHPFPVRVPVRVPFR 226
Score = 21.8 bits (44), Expect(2) = 8.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -1
Query: 465 IFYNHHHHH 439
I +HHHHH
Sbjct: 205 IIIHHHHHH 213
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 189 SSLSNSTTKILLEPVPVSSVERLPLRSSFNKVEASTLTGCIYKVSLSSKMTP 34
S ++ S+T L +P+S+ LPL SS + S ++ +S+ K P
Sbjct: 266 SDVATSSTTSTLPSLPISTSSGLPLISSIHPSRTSAMSPVTSSLSIICKAKP 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,651,660
Number of Sequences: 59808
Number of extensions: 483054
Number of successful extensions: 1509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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