Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0099
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    28   1.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   7.0  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   7.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (283), Expect = 1e-27
 Identities = 54/94 (57%), Positives = 58/94 (61%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPSFP 536
                                ARG  ++  P  P
Sbjct: 118 NEKRYAIASAVAASGVPSLLLARGHRIEEIPEVP 151



 Score =  108 bits (259), Expect = 1e-24
 Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 691
           IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 692 RKGPLIIFNKDQGLTRVSATSP-V*LLNVNKL 784
           R+GPL++FN+D G+ +     P V ++NV +L
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRL 235



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (283), Expect = 1e-27
 Identities = 54/94 (57%), Positives = 58/94 (61%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPSFP 536
                                ARG  ++  P  P
Sbjct: 118 NEKRYAISSAVAASGVPSLLLARGHRIEEIPEVP 151



 Score =  107 bits (258), Expect = 1e-24
 Identities = 49/92 (53%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 691
           IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 692 RKGPLIIFNKDQGLTRVSATSP-V*LLNVNKL 784
           R+GPL++FN+D G+ +     P V ++NV +L
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRL 235



 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 659 KGKMRNRRRIQRKGPLIIFNKDQGLTRVSATS 754
           KGK+ +R+ + R   L+  NKD GLT  SA S
Sbjct: 108 KGKIFSRKELNRLQALVYKNKD-GLTATSAAS 138


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 143 APCTVSLFSEYTDTKGRATDRLISLL 66
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 81  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 191
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 156 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 251
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,406
Number of Sequences: 5004
Number of extensions: 61326
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)