Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0099
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               126   3e-29
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     34   0.15 
SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.61 
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.2  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   4.3  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              29   5.6  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   7.5  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  126 bits (303), Expect = 3e-29
 Identities = 53/55 (96%), Positives = 54/55 (98%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 419
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 55  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
 Frame = +2

Query: 512 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 691
           IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + 
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVM 200

Query: 692 RKGPLIIFNKDQGLTRVSATSP-V*LLNVNKL 784
           RKGPLII+N DQGL +     P V L +V++L
Sbjct: 201 RKGPLIIYNNDQGLRQAFRNLPGVELQHVDRL 232



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 265
           HH  CY  H    Y Y+ H H  + + H  YP  RH++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_16362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -3

Query: 384 YVHHDTCYRR-HPDRTYGYHHHGHAEFGQQHVRYPMIRHWF-----GDQLLAHAVGLPRV 223
           Y HH+ C+        YG   H H     Q +++  +R W+     G++   H +GL + 
Sbjct: 78  YGHHEGCWNPLMKPYLYGTREHFHIIDLNQTIKHFRVRLWYFVYLYGNREHFHIIGLNQT 137

Query: 222 LGHRNVNIIDQVRTYGRLEY 163
           + H  V +   V  YG  E+
Sbjct: 138 IKHFRVRLWYFVYLYGNREH 157


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 685 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 536
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 363 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 256
           Y +HP  T+ YHH  H +   ++ ++P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 363 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 271
           Y +HP  T+ YH H      + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 337 WVPPPRTRGIRATARPVPHD 278
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 342 TYGYHHHGHAEFGQQHVRYPMI-RHWFGDQLLAHAVGLP-RVLGHRNVN 202
           +Y +HHHG  E   Q V    I R W   +L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 286
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 387 TYVHHDTCYRRHPDRTYGYHHHGHA 313
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 267  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 383
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +3

Query: 252 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G   Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 285 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 158  GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +1

Query: 457 QQPLLLLASQRSFRLEDNY*KDSRASLGCSRQSPGDQQDQTGCHLPEAPQGMV*Y 621
           Q PLLLL  + + R +D      R     S   PG    Q G   P  P GM  Y
Sbjct: 546 QSPLLLLTPKHNGRQKDLENSFERPEFRRSHSQPGQFWQQAGAQFPSHP-GMFPY 599


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 240
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 241 --CVSKELVTK 267
             C S E V K
Sbjct: 532 ENCPSVEAVVK 542


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 733 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 641
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,782,042
Number of Sequences: 59808
Number of extensions: 541243
Number of successful extensions: 1701
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)