Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0099
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   112   2e-25
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   5.0  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   5.0  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  112 bits (270), Expect = 2e-25
 Identities = 54/94 (57%), Positives = 58/94 (61%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH     
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNI 116

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPSFP 536
                               QARG ++ +    P
Sbjct: 117 AQKRYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
 Frame = +2

Query: 509 IIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRI 688
           +I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  
Sbjct: 142 VIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHK 201

Query: 689 QRKGPLIIFNKDQGLTRVSATSP-V*LLNVNKL 784
           Q+ GP++I+ +D    R     P V ++NV +L
Sbjct: 202 QKLGPVVIYGQDAECARAFRNIPGVDVMNVERL 234



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 691 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 539
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 542 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 718
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 719 KD 724
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 542 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 718
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 719 KD 724
           KD
Sbjct: 473 KD 474


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 385 IRPPRHMLPKA-P*PDLWVPPPRTRGIRATARPVPHDSALVW*PAP 251
           I P   ++PK+ P P     PP     RAT RP P + A+   PAP
Sbjct: 630 IAPSSSVVPKSQPRPSPTTRPPT----RATIRPTPQNKAVTSRPAP 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,214
Number of Sequences: 27780
Number of extensions: 383058
Number of successful extensions: 1176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)